Non-Coding RNA Search

Ss1.1-unkn-CTK602768791.R1.5

Sequence:


               
               CAGAATCCAGCTCACTGCCCTCTGCCAGTCACAGTGCACCCTCCTGCTAGGCTGTATCCC
TTTTGAGGCTGGGAAGTGGCCAGGGTTTGGTTATTAGAAATGATAATTCTGCAGACTTCA
GACTCACCTCATCAGGTGACTCTGGTTAACAGGAGTTCTTTGAGTGATGAACTCAAAAGA
CTGCAGTTGAAGAAGGAGGCCAAGGCAAAAATCAGCATAGTTATATTAAGAAAGCTTCAG
GAAGTAGGAAGAGAATACTGCCTCCCAGCCTCAACTGCAGATGTTATTGAAGACAAGTTT
TTGAAACAGTGCTCCTGTAAACTTTGGTTGAAATACAAGTAGACAAGGAGAGAGGCAACT
CAGGAAATATTCTAAATTTATAGTATCTATAATGTGTGTACACACACAGCCATAGAGAGA
ACATATGTAGCTGTTTAAATCATTTGGGGATTTGCTGAATAAAGTTCTCGAGAAAATTAT
CTAAAACTAAATGCTGGTTGAATCACAAGGTGGAAACAAGCCTATGGTTATCTTCTGAAG
TGCCATCAGGTGAAAACTGCCAAACACCTCACTCAGGAAACCATCCGTGAAACAGGTGTC
TTCCCTTCAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAATCCAGCTCACTGCCCTCTGCCAGTCACAGTGCACCCTCCTGCTAGGCTGTATCCC
TTTTGAGGCTGGGAAGTGGCCAGGGTTTGGTTATTAGAAATGATAATTCTGCAGACTTCA
GACTCACCTCATCAGGTGACTCTGGTTAACAGGAGTTCTTTGAGTGATGAACTCAAAAGA
CTGCAGTTGAAGAAGGAGGCCAAGGCAAAAATCAGCATAGTTATATTAAGAAAGCTTCAG
GAAGTAGGAAGAGAATACTGCCTCCCAGCCTCAACTGCAGATGTTATTGAAGACAAGTTT
TTGAAACAGTGCTCCTGTAAACTTTGGTTGAAATACAAGTAGACAAGGAGAGAGGCAACT
CAGGAAATATTCTAAATTTATAGTATCTATAATGTGTGTACACACACAGCCATAGAGAGA
ACATATGTAGCTGTTTAAATCATTTGGGGATTTGCTGAATAAAGTTCTCGAGAAAATTAT
CTAAAACTAAATGCTGGTTGAATCACAAGGTGGAAACAAGCCTATGGTTATCTTCTGAAG
TGCCATCAGGTGAAAACTGCCAAACACCTCACTCAGGAAACCATCCGTGAAACAGGTGTC
TTCCCTTCAAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-279, + strand, RNAz p=0.993816

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-279, + strand, RNAz p=0.993816

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               47-272, DB527146 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB527146.1|), blast E-value=6e-36, identity=85.4% 
               

               
               47-272, DB568033 RIKEN full-length enriched human cDNA library, 
(dbj|DB568033.1|), blast E-value=6e-36, identity=85.4% 
               

               
               47-274, tx55c10.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE (gb|AI632917.1|), 
blast E-value=4e-37, identity=85.53% 
               

               
               47-274, wn72e03.x1 NCI_CGAP_Ut1 Homo sapiens cDNA clone IMAGE (gb|AI923858.1|), 
blast E-value=4e-37, identity=85.53% 
               

               
               47-274, EST387932 MAGE resequences, MAGN Homo sapiens cDNA, mRNA sequence 
(gb|AW975823.1|), blast E-value=4e-37, identity=85.53% 
               

               
               47-274, UI-H-FE0-bbs-k-24-0-UI.s1 NCI_CGAP_FE0 Homo sapiens cDNA clone 
(gb|CA416063.1|), blast E-value=4e-37, identity=85.53%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               47-272, DB527146 RIKEN full-length enriched human cDNA library, testis Homo 
(dbj|DB527146.1|), blast E-value=6e-36, identity=85.4% 
               

               
               47-272, DB568033 RIKEN full-length enriched human cDNA library, 
(dbj|DB568033.1|), blast E-value=6e-36, identity=85.4% 
               

               
               47-274, tx55c10.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE (gb|AI632917.1|), 
blast E-value=4e-37, identity=85.53% 
               

               
               47-274, wn72e03.x1 NCI_CGAP_Ut1 Homo sapiens cDNA clone IMAGE (gb|AI923858.1|), 
blast E-value=4e-37, identity=85.53% 
               

               
               47-274, EST387932 MAGE resequences, MAGN Homo sapiens cDNA, mRNA sequence 
(gb|AW975823.1|), blast E-value=4e-37, identity=85.53% 
               

               
               47-274, UI-H-FE0-bbs-k-24-0-UI.s1 NCI_CGAP_FE0 Homo sapiens cDNA clone 
(gb|CA416063.1|), blast E-value=4e-37, identity=85.53%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK056402, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK056402, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-572, gnl|bosTau2|chr3 (15068701-15069292)
               

               
               2-572, gnl|Hg17|chr1 (148559540-148558959)
               

               
               2-572, gnl|Mm7|chr3 (94304982-94305540)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-572, gnl|bosTau2|chr3 (15068701-15069292)
               

               
               2-572, gnl|Hg17|chr1 (148559540-148558959)
               

               
               2-572, gnl|Mm7|chr3 (94304982-94305540)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cte (0.29274)
               

               
               sug (0.127291)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               sug (0.127291)

	47-272, DB527146 RIKEN full-length enriched human cDNA library, testis Homo (dbj\|DB527146.1\|), blast E-value=6e-36, identity=85.4%
	47-272, DB568033 RIKEN full-length enriched human cDNA library, (dbj\|DB568033.1\|), blast E-value=6e-36, identity=85.4%
	47-274, tx55c10.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE (gb\|AI632917.1\|), blast E-value=4e-37, identity=85.53%
	47-274, wn72e03.x1 NCI_CGAP_Ut1 Homo sapiens cDNA clone IMAGE (gb\|AI923858.1\|), blast E-value=4e-37, identity=85.53%
	47-274, EST387932 MAGE resequences, MAGN Homo sapiens cDNA, mRNA sequence (gb\|AW975823.1\|), blast E-value=4e-37, identity=85.53%
	47-274, UI-H-FE0-bbs-k-24-0-UI.s1 NCI_CGAP_FE0 Homo sapiens cDNA clone (gb\|CA416063.1\|), blast E-value=4e-37, identity=85.53%

	2-572, gnl\|bosTau2\|chr3 (15068701-15069292)
	2-572, gnl\|Hg17\|chr1 (148559540-148558959)
	2-572, gnl\|Mm7\|chr3 (94304982-94305540)