Ss1.1-unkn-D28PE04A11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTCACCCACCAATACTGTTCATATGTATCCACCGGAAATGGCTCCTTCATCTGCGCCT CCTTCCACCCCTCCAACTCATAAAGCCAAGCCACAGATACCTGCTGAGCGGGACAGGGAA CCATCCAAACTGAAGCGCTCCTACTCCTCCCCAGATATAACCCAGGCCATCCAAGAGGAA GAGAAGAGGAGGCCAACAGTGACACCAACAGTTAATCGGGAAAACAAGCCAACAAGCTAC CCTAAAGCTGAGATCACAAGGCTTTCTGCTTCTCAGATTCGAAACCTGAATCCTGTTTTT GGAGGATCTGGACCAGCTCTCACTGGACTTCGTAATTTAGGAAATACTTGTTACATGAAC TCAATACTCCAGTGCCTATGTAATGCTCCACATTTGGCTGATTATTTCAACCGCAACTGT TATCAGGAAGATATTAATAGGTCAAATTTGTTGGGACATAAAGGTGAAGTAGCAGAAGAA TTTGGCATAATCATGAAAGCCCTGTGGACAGGACAGTACAGGTATATCAGTCCAAAAGAC TTCAAAATCACCATTGGCAAGATCAATGACCAATTTGCTGGATACAGCCAGCAAGATTCA CAAGAACTGCTTCTGTTCCTGATGGATGGTCTCCATGAAGATCTTAATAAAGCTGATAAT CGGAAGAGACATAAAGAAGAAAATAATGATCATCTTGATGACTTTAAAGCTGCAGAATAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTCACCCACCAATACTGTTCATATGTATCCACCGGAAATGGCTCCTTCATCTGCGCCT CCTTCCACCCCTCCAACTCATAAAGCCAAGCCACAGATACCTGCTGAGCGGGACAGGGAA CCATCCAAACTGAAGCGCTCCTACTCCTCCCCAGATATAACCCAGGCCATCCAAGAGGAA GAGAAGAGGAGGCCAACAGTGACACCAACAGTTAATCGGGAAAACAAGCCAACAAGCTAC CCTAAAGCTGAGATCACAAGGCTTTCTGCTTCTCAGATTCGAAACCTGAATCCTGTTTTT GGAGGATCTGGACCAGCTCTCACTGGACTTCGTAATTTAGGAAATACTTGTTACATGAAC TCAATACTCCAGTGCCTATGTAATGCTCCACATTTGGCTGATTATTTCAACCGCAACTGT TATCAGGAAGATATTAATAGGTCAAATTTGTTGGGACATAAAGGTGAAGTAGCAGAAGAA TTTGGCATAATCATGAAAGCCCTGTGGACAGGACAGTACAGGTATATCAGTCCAAAAGAC TTCAAAATCACCATTGGCAAGATCAATGACCAATTTGCTGGATACAGCCAGCAAGATTCA CAAGAACTGCTTCTGTTCCTGATGGATGGTCTCCATGAAGATCTTAATAAAGCTGATAAT CGGAAGAGACATAAAGAAGAAAATAATGATCATCTTGATGACTTTAAAGCTGCAGAATAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 439-652, + strand, RNAz p=0.976653 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 439-652, + strand, RNAz p=0.976653 |
| Aligned organism(s): 70 entry(ies) | More info |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
| 1-228, gnl|bosTau2|chr3 (16113147-16112920) | |
| 1-228, gnl|canFam2|chr30 (19391011-19391274) | |
| 1-228, gnl|canFam2|chr30 (19391006-19391271) | |
| 1-228, gnl|danRer3|chr7 (20473148-20473429) | |
| 1-228, gnl|danRer3|chr7 (20473136-20473426) | |
| 1-228, gnl|dasNov1|scaffold_19004 (21807-22066) | |
| 1-228, gnl|dasNov1|scaffold_19004 (21802-22063) | |
| 1-228, gnl|echTel1|scaffold_100902 (5646-5383) | |
| 1-228, gnl|echTel1|scaffold_100902 (5648-5386) | |
| 1-228, gnl|fr1|chrUn (240432007-240431719) | |
| 1-228, gnl|fr1|chrUn (240432011-240431722) | |
| 1-228, gnl|galGal2|chr10 (11429831-11429568) | |
| 1-228, gnl|galGal2|chr10 (11429836-11429571) | |
| 1-228, gnl|hg17|chr15 (48569755-48570018) | |
| 1-228, gnl|Hg17|chr15 (48569788-48570015) | |
| 1-228, gnl|hg17|chr6 (31353131-31353395) | |
| 1-228, gnl|loxAfr1|scaffold_28307 (15341-15078) | |
| 1-228, gnl|loxAfr1|scaffold_28307 (15343-15081) | |
| 1-228, gnl|mm7|chr2 (126489042-126489305) | |
| 1-228, gnl|mm7|chr2 (126489037-126489302) | |
| 1-228, gnl|Mm7|chr2 (126489075-126489302) | |
| 1-228, gnl|monDom2|scaffold_12 (17961612-17961349) | |
| 1-228, gnl|monDom2|scaffold_12 (17961617-17961352) | |
| 1-228, gnl|oryCun1|scaffold_102761 (602-339) | |
| 1-228, gnl|oryCun1|scaffold_120800 (12937-12672) | |
| 1-228, gnl|panTro1|chr16 (48590933-48591196) | |
| 1-228, gnl|panTro1|chr5 (31833967-31834231) | |
| 1-228, gnl|rheMac2|chr7 (28805153-28805416) | |
| 1-228, gnl|rheMac2|chr7 (28805148-28805413) | |
| 1-228, gnl|rn3|chr3 (114179637-114179900) | |
| 1-228, gnl|rn3|chr3 (114179632-114179897) | |
| 1-228, gnl|tetNig1|chr5 (9759288-9759587) | |
| 1-228, gnl|tetNig1|chr5 (9759284-9759584) | |
| 1-228, gnl|xenTro1|scaffold_613 (673885-674139) | |
| 1-228, gnl|xenTro1|scaffold_613 (673881-674136) | |
| 439-652, gnl|bosTau2|chr3 (16110438-16110225) | |
| 439-652, gnl|canFam2|chr30 (19393688-19393922) | |
| 439-652, gnl|canFam2|chr30 (19393696-19393906) | |
| 439-652, gnl|danRer3|chr7 (20473962-20474177) | |
| 439-652, gnl|danRer3|chr7 (20473862-20474173) | |
| 439-652, gnl|dasNov1|scaffold_21442 (20900-20666) | |
| 439-652, gnl|dasNov1|scaffold_21442 (20894-20682) | |
| 439-652, gnl|echTel1|scaffold_100902 (4184-3956) | |
| 439-652, gnl|echTel1|scaffold_100902 (4178-3965) | |
| 439-652, gnl|fr1|chrUn (240431304-240431088) | |
| 439-652, gnl|fr1|chrUn (240431388-240431093) | |
| 439-652, gnl|galGal2|chr10 (11428418-11428184) | |
| 439-652, gnl|galGal2|chr10 (11428398-11428200) | |
| 439-652, gnl|hg17|chr15 (48573552-48573786) | |
| 439-652, gnl|Hg17|chr15 (48573557-48573770) | |
| 439-652, gnl|hg17|chr6 (31353605-31353817) | |
| 439-652, gnl|loxAfr1|scaffold_28307 (12538-12304) | |
| 439-652, gnl|loxAfr1|scaffold_28307 (12532-12320) | |
| 439-652, gnl|mm7|chr2 (126493118-126493342) | |
| 439-652, gnl|mm7|chr2 (126493122-126493334) | |
| 439-652, gnl|Mm7|chr2 (126493123-126493336) | |
| 439-652, gnl|monDom2|scaffold_12 (17955220-17954988) | |
| 439-652, gnl|monDom2|scaffold_12 (17955212-17955002) | |
| 439-652, gnl|oryCun1|scaffold_120800 (7950-7722) | |
| 439-652, gnl|oryCun1|scaffold_120800 (7951-7740) | |
| 439-652, gnl|panTro1|chr18 (12556740-12556954) | |
| 439-652, gnl|panTro1|chr5 (31834441-31834653) | |
| 439-652, gnl|rheMac2|chr7 (28808643-28808877) | |
| 439-652, gnl|rheMac2|chr7 (28808647-28808859) | |
| 439-652, gnl|rn3|chr3 (114183270-114183494) | |
| 439-652, gnl|rn3|chr3 (114183274-114183486) | |
| 439-652, gnl|tetNig1|chr5 (9759988-9760209) | |
| 439-652, gnl|tetNig1|chr5 (9759894-9760204) | |
| 439-652, gnl|xenTro1|scaffold_613 (675668-675905) | |
| 439-652, gnl|xenTro1|scaffold_613 (675677-675883) |
| Aligned organism(s): 70 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-228, gnl|bosTau2|chr3 (16113147-16112920) | |
| 1-228, gnl|canFam2|chr30 (19391011-19391274) | |
| 1-228, gnl|canFam2|chr30 (19391006-19391271) | |
| 1-228, gnl|danRer3|chr7 (20473148-20473429) | |
| 1-228, gnl|danRer3|chr7 (20473136-20473426) | |
| 1-228, gnl|dasNov1|scaffold_19004 (21807-22066) | |
| 1-228, gnl|dasNov1|scaffold_19004 (21802-22063) | |
| 1-228, gnl|echTel1|scaffold_100902 (5646-5383) | |
| 1-228, gnl|echTel1|scaffold_100902 (5648-5386) | |
| 1-228, gnl|fr1|chrUn (240432007-240431719) | |
| 1-228, gnl|fr1|chrUn (240432011-240431722) | |
| 1-228, gnl|galGal2|chr10 (11429831-11429568) | |
| 1-228, gnl|galGal2|chr10 (11429836-11429571) | |
| 1-228, gnl|hg17|chr15 (48569755-48570018) | |
| 1-228, gnl|Hg17|chr15 (48569788-48570015) | |
| 1-228, gnl|hg17|chr6 (31353131-31353395) | |
| 1-228, gnl|loxAfr1|scaffold_28307 (15341-15078) | |
| 1-228, gnl|loxAfr1|scaffold_28307 (15343-15081) | |
| 1-228, gnl|mm7|chr2 (126489042-126489305) | |
| 1-228, gnl|mm7|chr2 (126489037-126489302) | |
| 1-228, gnl|Mm7|chr2 (126489075-126489302) | |
| 1-228, gnl|monDom2|scaffold_12 (17961612-17961349) | |
| 1-228, gnl|monDom2|scaffold_12 (17961617-17961352) | |
| 1-228, gnl|oryCun1|scaffold_102761 (602-339) | |
| 1-228, gnl|oryCun1|scaffold_120800 (12937-12672) | |
| 1-228, gnl|panTro1|chr16 (48590933-48591196) | |
| 1-228, gnl|panTro1|chr5 (31833967-31834231) | |
| 1-228, gnl|rheMac2|chr7 (28805153-28805416) | |
| 1-228, gnl|rheMac2|chr7 (28805148-28805413) | |
| 1-228, gnl|rn3|chr3 (114179637-114179900) | |
| 1-228, gnl|rn3|chr3 (114179632-114179897) | |
| 1-228, gnl|tetNig1|chr5 (9759288-9759587) | |
| 1-228, gnl|tetNig1|chr5 (9759284-9759584) | |
| 1-228, gnl|xenTro1|scaffold_613 (673885-674139) | |
| 1-228, gnl|xenTro1|scaffold_613 (673881-674136) | |
| 439-652, gnl|bosTau2|chr3 (16110438-16110225) | |
| 439-652, gnl|canFam2|chr30 (19393688-19393922) | |
| 439-652, gnl|canFam2|chr30 (19393696-19393906) | |
| 439-652, gnl|danRer3|chr7 (20473962-20474177) | |
| 439-652, gnl|danRer3|chr7 (20473862-20474173) | |
| 439-652, gnl|dasNov1|scaffold_21442 (20900-20666) | |
| 439-652, gnl|dasNov1|scaffold_21442 (20894-20682) | |
| 439-652, gnl|echTel1|scaffold_100902 (4184-3956) | |
| 439-652, gnl|echTel1|scaffold_100902 (4178-3965) | |
| 439-652, gnl|fr1|chrUn (240431304-240431088) | |
| 439-652, gnl|fr1|chrUn (240431388-240431093) | |
| 439-652, gnl|galGal2|chr10 (11428418-11428184) | |
| 439-652, gnl|galGal2|chr10 (11428398-11428200) | |
| 439-652, gnl|hg17|chr15 (48573552-48573786) | |
| 439-652, gnl|Hg17|chr15 (48573557-48573770) | |
| 439-652, gnl|hg17|chr6 (31353605-31353817) | |
| 439-652, gnl|loxAfr1|scaffold_28307 (12538-12304) | |
| 439-652, gnl|loxAfr1|scaffold_28307 (12532-12320) | |
| 439-652, gnl|mm7|chr2 (126493118-126493342) | |
| 439-652, gnl|mm7|chr2 (126493122-126493334) | |
| 439-652, gnl|Mm7|chr2 (126493123-126493336) | |
| 439-652, gnl|monDom2|scaffold_12 (17955220-17954988) | |
| 439-652, gnl|monDom2|scaffold_12 (17955212-17955002) | |
| 439-652, gnl|oryCun1|scaffold_120800 (7950-7722) | |
| 439-652, gnl|oryCun1|scaffold_120800 (7951-7740) | |
| 439-652, gnl|panTro1|chr18 (12556740-12556954) | |
| 439-652, gnl|panTro1|chr5 (31834441-31834653) | |
| 439-652, gnl|rheMac2|chr7 (28808643-28808877) | |
| 439-652, gnl|rheMac2|chr7 (28808647-28808859) | |
| 439-652, gnl|rn3|chr3 (114183270-114183494) | |
| 439-652, gnl|rn3|chr3 (114183274-114183486) | |
| 439-652, gnl|tetNig1|chr5 (9759988-9760209) | |
| 439-652, gnl|tetNig1|chr5 (9759894-9760204) | |
| 439-652, gnl|xenTro1|scaffold_613 (675668-675905) | |
| 439-652, gnl|xenTro1|scaffold_613 (675677-675883) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lun (0.150489) | |
| cty (0.10408) |