Non-Coding RNA Search

Ss1.1-unkn-D85338.3

Sequence:


               
               ACAACCTCTACGGGAAGGACGCCAAGGAGAGAGCCCTGATGGATATGTATACAGAAGGTG
TGGCAGATTTGGGTGAAATGATCTTGCTGTTGCCACTGCGCCCACCTGATGAACAAGATG
CCGAGGTGGCCTCGATCAAAGAAAAATCGACAAACCGTTATCTTCCTGCATTTGAAAAAG
TGTTGAAGAGCCATGGACAAGACTACCTTGTGGGCAACAAGCTGAGCAGGGCTGACATCC
AGCTGGTTGAACTTCTCTACTGCCTGGAAGAGCTGGACCCCAGCCTGCTGGCCAACTTCC
CTCTGCTGAAGGCCCTGAAAACCAGAGTCAGCAACCTCCCCACCGTGAAGAAGTTTCTGC
AGCCTGGCAGCCAGAGGAAGCCTCCCATGGATGAGAAATGTTTAGAAGAAACCAAGCATA
TTTTCCGGATTAAATAAAGCCGGCTGAGTATCCCAGGACACCCAGGACCAATCCTCTGAA
AGTTGCTATCAATCAACTGCTTGACCTAAATGTAGATCCCAGTTATCGTCAATCTAATAA
ATGTTTCCACACTGTAAGTGTTCATTTCATTAGAATTAAGATTTAGTTGCAAAACAATCA
ATTTTGTTTTGTTCGCACGCAATATCATGATCTTCTCCCGGAATGTACCTGAGACTTAAA
CATAATTAAACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAACCTCTACGGGAAGGACGCCAAGGAGAGAGCCCTGATGGATATGTATACAGAAGGTG
TGGCAGATTTGGGTGAAATGATCTTGCTGTTGCCACTGCGCCCACCTGATGAACAAGATG
CCGAGGTGGCCTCGATCAAAGAAAAATCGACAAACCGTTATCTTCCTGCATTTGAAAAAG
TGTTGAAGAGCCATGGACAAGACTACCTTGTGGGCAACAAGCTGAGCAGGGCTGACATCC
AGCTGGTTGAACTTCTCTACTGCCTGGAAGAGCTGGACCCCAGCCTGCTGGCCAACTTCC
CTCTGCTGAAGGCCCTGAAAACCAGAGTCAGCAACCTCCCCACCGTGAAGAAGTTTCTGC
AGCCTGGCAGCCAGAGGAAGCCTCCCATGGATGAGAAATGTTTAGAAGAAACCAAGCATA
TTTTCCGGATTAAATAAAGCCGGCTGAGTATCCCAGGACACCCAGGACCAATCCTCTGAA
AGTTGCTATCAATCAACTGCTTGACCTAAATGTAGATCCCAGTTATCGTCAATCTAATAA
ATGTTTCCACACTGTAAGTGTTCATTTCATTAGAATTAAGATTTAGTTGCAAAACAATCA
ATTTTGTTTTGTTCGCACGCAATATCATGATCTTCTCCCGGAATGTACCTGAGACTTAAA
CATAATTAAACG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57208651|emb|CAI42453.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57208651|emb|CAI42453.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               38-181, gnl|bosTau2|chr23 (22768958-22769101)
               

               
               38-181, gnl|canFam2|chr12 (23368930-23369135)
               

               
               38-181, gnl|dasNov1|scaffold_40613 (10845-10633)
               

               
               38-181, gnl|echTel1|scaffold_214137 (3163-2965)
               

               
               38-181, gnl|hg17|chr6 (52741842-52742078)
               

               
               38-181, gnl|Hg17|chr6 (52807039-52806896)
               

               
               38-181, gnl|loxAfr1|scaffold_76469 (342-125)
               

               
               38-181, gnl|mm7|chr1 (21378133-21377934)
               

               
               38-181, gnl|Mm7|chr9 (78408236-78408093)
               

               
               38-181, gnl|oryCun1|scaffold_174004 (84543-84308)
               

               
               38-181, gnl|panTro1|chr5 (53759973-53760209)
               

               
               38-181, gnl|rheMac2|chr4 (52416344-52416581)
               

               
               38-181, gnl|rn3|chr9 (20024290-20024077)
               


               
               307-670, gnl|bosTau2|chr23 (22818589-22818952)
               

               
               307-670, gnl|Hg17|chr6 (52712473-52712115)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-181, gnl|bosTau2|chr23 (22768958-22769101)
               

               
               38-181, gnl|canFam2|chr12 (23368930-23369135)
               

               
               38-181, gnl|dasNov1|scaffold_40613 (10845-10633)
               

               
               38-181, gnl|echTel1|scaffold_214137 (3163-2965)
               

               
               38-181, gnl|hg17|chr6 (52741842-52742078)
               

               
               38-181, gnl|Hg17|chr6 (52807039-52806896)
               

               
               38-181, gnl|loxAfr1|scaffold_76469 (342-125)
               

               
               38-181, gnl|mm7|chr1 (21378133-21377934)
               

               
               38-181, gnl|Mm7|chr9 (78408236-78408093)
               

               
               38-181, gnl|oryCun1|scaffold_174004 (84543-84308)
               

               
               38-181, gnl|panTro1|chr5 (53759973-53760209)
               

               
               38-181, gnl|rheMac2|chr4 (52416344-52416581)
               

               
               38-181, gnl|rn3|chr9 (20024290-20024077)
               


               
               307-670, gnl|bosTau2|chr23 (22818589-22818952)
               

               
               307-670, gnl|Hg17|chr6 (52712473-52712115)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.150489)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	38-181, gnl\|bosTau2\|chr23 (22768958-22769101)
	38-181, gnl\|canFam2\|chr12 (23368930-23369135)
	38-181, gnl\|dasNov1\|scaffold_40613 (10845-10633)
	38-181, gnl\|echTel1\|scaffold_214137 (3163-2965)
	38-181, gnl\|hg17\|chr6 (52741842-52742078)
	38-181, gnl\|Hg17\|chr6 (52807039-52806896)
	38-181, gnl\|loxAfr1\|scaffold_76469 (342-125)
	38-181, gnl\|mm7\|chr1 (21378133-21377934)
	38-181, gnl\|Mm7\|chr9 (78408236-78408093)
	38-181, gnl\|oryCun1\|scaffold_174004 (84543-84308)
	38-181, gnl\|panTro1\|chr5 (53759973-53760209)
	38-181, gnl\|rheMac2\|chr4 (52416344-52416581)
	38-181, gnl\|rn3\|chr9 (20024290-20024077)

	307-670, gnl\|bosTau2\|chr23 (22818589-22818952)
	307-670, gnl\|Hg17\|chr6 (52712473-52712115)