Non-Coding RNA Search

Ss1.1-unkn-F_1_D12.5

Sequence:


               
               AGTGAAGATGGCCAAAGTCCCTGACCTCTTTGAAGACCTGAAGAACTGCTACAGTGAAAA
TGAAGAATACAGTTCTGATATCGACCATCTCTCTCTGAATCAGAAGTCCTTCTATGATGC
CAGCTATGAGCCACTTCCTGGGGACGGCATGGATAAATTTATGCCTCTGAGTACCTCTAA
AACCTCTAAGACATCCAGGCTAAACTTCAAGGACAGTGTGGTGATGGCAGCAGCCAACGG
GAAGATTCTGAAGAAGAGACGGTTGAGTTTAAATCAGTTCATCACCGATGACGACCTGGA
AGCCATTGCCAATGACACAGAAGAAGAAATCATCAAACCCAGATCAGCAACATACAGCTT
CCAGAGCAACATGAAATACAACTTCATGAGGGTCATCAACCACCAGTGCATCCTGAATGA
TGCCCGCAATCAAAGCATCATTCGAGACCCGTCAGGTCAATACCTCATGGCTGCTGTGCT
AAATAACCTGGATGAGGCAGTGAAATTTGACATGGCTGCTTATACATCAAATGATGATTC
GCAACTTCCTGTGACTCTAAGAATCTCAGAAACCCGACTGTTTGTGAGTGCTCAAAACGA
AGACGAACCCGTGTTGCTGAAGGAGCTGCCTGAGACACCCAAAACCATCAAAGATAAGAC
CAGTCTCCTCTTCTTCTGGGAGAAGCATGGCAATATGGACTACTTCAAATCAGCCGCCCA
TCCAAAGTTGTTTATTGCCACAAGGCAGGAAAAACTGGTGCACATGGCACCGGGGCTGCC
CCCTGTCACTGACTTTCAGATACTGGAAAACCAGTCTTGACTCTGGTGTCTACTTACCTG
TGAAGTGTTGACAGGCCGTATGGACCTGCCCGGGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGAAGATGGCCAAAGTCCCTGACCTCTTTGAAGACCTGAAGAACTGCTACAGTGAAAA
TGAAGAATACAGTTCTGATATCGACCATCTCTCTCTGAATCAGAAGTCCTTCTATGATGC
CAGCTATGAGCCACTTCCTGGGGACGGCATGGATAAATTTATGCCTCTGAGTACCTCTAA
AACCTCTAAGACATCCAGGCTAAACTTCAAGGACAGTGTGGTGATGGCAGCAGCCAACGG
GAAGATTCTGAAGAAGAGACGGTTGAGTTTAAATCAGTTCATCACCGATGACGACCTGGA
AGCCATTGCCAATGACACAGAAGAAGAAATCATCAAACCCAGATCAGCAACATACAGCTT
CCAGAGCAACATGAAATACAACTTCATGAGGGTCATCAACCACCAGTGCATCCTGAATGA
TGCCCGCAATCAAAGCATCATTCGAGACCCGTCAGGTCAATACCTCATGGCTGCTGTGCT
AAATAACCTGGATGAGGCAGTGAAATTTGACATGGCTGCTTATACATCAAATGATGATTC
GCAACTTCCTGTGACTCTAAGAATCTCAGAAACCCGACTGTTTGTGAGTGCTCAAAACGA
AGACGAACCCGTGTTGCTGAAGGAGCTGCCTGAGACACCCAAAACCATCAAAGATAAGAC
CAGTCTCCTCTTCTTCTGGGAGAAGCATGGCAATATGGACTACTTCAAATCAGCCGCCCA
TCCAAAGTTGTTTATTGCCACAAGGCAGGAAAAACTGGTGCACATGGCACCGGGGCTGCC
CCCTGTCACTGACTTTCAGATACTGGAAAACCAGTCTTGACTCTGGTGTCTACTTACCTG
TGAAGTGTTGACAGGCCGTATGGACCTGCCCGGGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               IL1A_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               IL1A_PIG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               101-326, gnl|bosTau2|chr11 (31506033-31505808)
               

               
               101-326, gnl|Hg17|chr2 (113255637-113255412)
               

               
               101-326, gnl|Mm7|chr2 (129047548-129047317)
               


               
               621-865, gnl|bosTau2|chr11 (31500114-31499870)
               

               
               621-865, gnl|Hg17|chr2 (113249077-113248824)
               

               
               621-865, gnl|Mm7|chr2 (129041754-129041507)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-326, gnl|bosTau2|chr11 (31506033-31505808)
               

               
               101-326, gnl|Hg17|chr2 (113255637-113255412)
               

               
               101-326, gnl|Mm7|chr2 (129047548-129047317)
               


               
               621-865, gnl|bosTau2|chr11 (31500114-31499870)
               

               
               621-865, gnl|Hg17|chr2 (113249077-113248824)
               

               
               621-865, gnl|Mm7|chr2 (129041754-129041507)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               csp (0.161186)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               clu (0.119646)

	101-326, gnl\|bosTau2\|chr11 (31506033-31505808)
	101-326, gnl\|Hg17\|chr2 (113255637-113255412)
	101-326, gnl\|Mm7\|chr2 (129047548-129047317)

	621-865, gnl\|bosTau2\|chr11 (31500114-31499870)
	621-865, gnl\|Hg17\|chr2 (113249077-113248824)
	621-865, gnl\|Mm7\|chr2 (129041754-129041507)