Non-Coding RNA Search

Ss1.1-unkn-F_C0001825c_C07.5

Sequence:


               
               GAGCGGCCGCCCGGGCAGGTGTGAGGACACCAGGGGACCAGCCAGGAGAGAGACAAGCCA
CTCCAGGACCCCCTAGAAATAACCTCTCAGAAGACACACCCCCGAACAGGCAGCCGGACG
ACTCTCTCCCTCTCACACGCTGCCCCGGGGCGCCACCATCTCCCAGCTGGACCTGAGCCC
CTCTGAAAAAGACACCATGAGCACTGAGAGCATGATCCGAGACGTGGAGCTGGCGGAGGA
GGCGCTCGCCAAGAAGGCCGGGGGCCCCCAGGGCTCCAGGAGGTGCCTGTGCCTCAGCCT
CTTCTCCTTCCTCCTGGTCGCAGGAGCCACCACGCTCTTCTGCCTACTGCACTTCGAGGT
TATCGGCCCCCAGAAGGAAGAGTTTCCAGCTGGCCCCTTGAGCATCAACCCTCTGGCCCA
AGGACTCAGATCATCGTCTCAAACCTCAGATAAGCCCGTCGCCCACGTTGTAGCCAATGT
CAAAGCCGAGGGACAGCTCCAATGGCAGAGTGGGTATGCCAATGCCCTCCTGGCCAACGG
CGTGAAGCTGAAAGACAACCAGCTGGTGGTGCCGACAGATGGGCTGTACCTCATCTACTC
CCAGGTCCTCTTCAGGGGCCAAGGCTGCCCTTCCACCAACGTTTTCCTCACTCACACCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGGCCGCCCGGGCAGGTGTGAGGACACCAGGGGACCAGCCAGGAGAGAGACAAGCCA
CTCCAGGACCCCCTAGAAATAACCTCTCAGAAGACACACCCCCGAACAGGCAGCCGGACG
ACTCTCTCCCTCTCACACGCTGCCCCGGGGCGCCACCATCTCCCAGCTGGACCTGAGCCC
CTCTGAAAAAGACACCATGAGCACTGAGAGCATGATCCGAGACGTGGAGCTGGCGGAGGA
GGCGCTCGCCAAGAAGGCCGGGGGCCCCCAGGGCTCCAGGAGGTGCCTGTGCCTCAGCCT
CTTCTCCTTCCTCCTGGTCGCAGGAGCCACCACGCTCTTCTGCCTACTGCACTTCGAGGT
TATCGGCCCCCAGAAGGAAGAGTTTCCAGCTGGCCCCTTGAGCATCAACCCTCTGGCCCA
AGGACTCAGATCATCGTCTCAAACCTCAGATAAGCCCGTCGCCCACGTTGTAGCCAATGT
CAAAGCCGAGGGACAGCTCCAATGGCAGAGTGGGTATGCCAATGCCCTCCTGGCCAACGG
CGTGAAGCTGAAAGACAACCAGCTGGTGGTGCCGACAGATGGGCTGTACCTCATCTACTC
CCAGGTCCTCTTCAGGGGCCAAGGCTGCCCTTCCACCAACGTTTTCCTCACTCACACCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47522866|ref|NP_999187.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47522866|ref|NP_999187.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               44-140, - strand, RNAz p=0.765382
               

               
               220-337, - strand, RNAz p=0.590278
               

               
               221-340, - strand, RNAz p=0.770039

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-140, - strand, RNAz p=0.765382
               

               
               220-337, - strand, RNAz p=0.590278
               

               
               221-340, - strand, RNAz p=0.770039

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               25-382, gnl|bosTau2|chr23 (23241593-23241951)
               

               
               25-382, gnl|canFam2|chr12 (4077426-4077957)
               

               
               25-382, gnl|dasNov1|scaffold_73543 (5-516)
               

               
               25-382, gnl|echTel1|scaffold_277001 (45661-46168)
               

               
               25-382, gnl|hg17|chr6 (31651209-31651723)
               

               
               25-382, gnl|Hg17|chr6 (31651341-31651683)
               

               
               25-382, gnl|loxAfr1|scaffold_17944 (45722-46232)
               

               
               25-382, gnl|mm7|chr17 (33298335-33297834)
               

               
               25-382, gnl|Mm7|chr17 (33298204-33297872)
               

               
               25-382, gnl|monDom2|scaffold_42 (17919542-17918921)
               

               
               25-382, gnl|oryCun1|scaffold_200762 (38518-38017)
               

               
               25-382, gnl|panTro1|chr5 (32047173-32047687)
               

               
               25-382, gnl|rheMac2|chr4 (31210317-31210829)
               

               
               25-382, gnl|rn3|chr20 (3661101-3661596)
               


               
               459-660, gnl|bosTau2|chr23 (23243109-23243310)
               

               
               459-660, gnl|Hg17|chr6 (31652857-31653058)
               

               
               459-660, gnl|Mm7|chr17 (33296795-33296597)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-382, gnl|bosTau2|chr23 (23241593-23241951)
               

               
               25-382, gnl|canFam2|chr12 (4077426-4077957)
               

               
               25-382, gnl|dasNov1|scaffold_73543 (5-516)
               

               
               25-382, gnl|echTel1|scaffold_277001 (45661-46168)
               

               
               25-382, gnl|hg17|chr6 (31651209-31651723)
               

               
               25-382, gnl|Hg17|chr6 (31651341-31651683)
               

               
               25-382, gnl|loxAfr1|scaffold_17944 (45722-46232)
               

               
               25-382, gnl|mm7|chr17 (33298335-33297834)
               

               
               25-382, gnl|Mm7|chr17 (33298204-33297872)
               

               
               25-382, gnl|monDom2|scaffold_42 (17919542-17918921)
               

               
               25-382, gnl|oryCun1|scaffold_200762 (38518-38017)
               

               
               25-382, gnl|panTro1|chr5 (32047173-32047687)
               

               
               25-382, gnl|rheMac2|chr4 (31210317-31210829)
               

               
               25-382, gnl|rn3|chr20 (3661101-3661596)
               


               
               459-660, gnl|bosTau2|chr23 (23243109-23243310)
               

               
               459-660, gnl|Hg17|chr6 (31652857-31653058)
               

               
               459-660, gnl|Mm7|chr17 (33296795-33296597)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               med (0.116252)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.116252)

	44-140, - strand, RNAz p=0.765382
	220-337, - strand, RNAz p=0.590278
	221-340, - strand, RNAz p=0.770039

	25-382, gnl\|bosTau2\|chr23 (23241593-23241951)
	25-382, gnl\|canFam2\|chr12 (4077426-4077957)
	25-382, gnl\|dasNov1\|scaffold_73543 (5-516)
	25-382, gnl\|echTel1\|scaffold_277001 (45661-46168)
	25-382, gnl\|hg17\|chr6 (31651209-31651723)
	25-382, gnl\|Hg17\|chr6 (31651341-31651683)
	25-382, gnl\|loxAfr1\|scaffold_17944 (45722-46232)
	25-382, gnl\|mm7\|chr17 (33298335-33297834)
	25-382, gnl\|Mm7\|chr17 (33298204-33297872)
	25-382, gnl\|monDom2\|scaffold_42 (17919542-17918921)
	25-382, gnl\|oryCun1\|scaffold_200762 (38518-38017)
	25-382, gnl\|panTro1\|chr5 (32047173-32047687)
	25-382, gnl\|rheMac2\|chr4 (31210317-31210829)
	25-382, gnl\|rn3\|chr20 (3661101-3661596)

	459-660, gnl\|bosTau2\|chr23 (23243109-23243310)
	459-660, gnl\|Hg17\|chr6 (31652857-31653058)
	459-660, gnl\|Mm7\|chr17 (33296795-33296597)