Non-Coding RNA Search

Ss1.1-unkn-F_C0001825c_H11.5

Sequence:


               
               GGATGTGTGGCCTGGACAACCGGGCACTGACCACCACCAAGAATTGGAACTGGGGCTTCC
AGACTCGCTGGGGTCCTTGGGTTTGGATTCCTGGATGCAACCTGGGACATCTGGAATGTG
GCTGCCAGGGAAGCTTGGGTTCCAATCGGAATACTTCAGAACATTCCTTGAGAAGATTTC
ACCTCAATCTTGATGAGGGGACTTTTTAGGCTTCCCTTTCTTCCAATTTTCCAGACTTCC
CTGGGATGGGGAGCCCAGCCCCAAACCCCACAGGGCCAGCTCCCTCTTATTTATATTTGC
ACTTGGCATTATTATTTATTTATTTATTTATTATTTTGGTCGCGGCCGAGGTATTTATTC
AGGAGGGCGAGGTGTCCTGGGAGACCCAGCATAAGGGCTGCCTTGGTTCAGATGTGTTTT
CTGTGAAAACGGAGCTGAACTGTAGGTTGCTCCCACCTGGCCTCCTAGCCTCTGTGCCTC
CTTTTGCTTATGTTTTTAAAAACAAATATTTATCTGATCGAGTTGTCTAAATAATGCTGA
TTTGGTGACTAACTTGTCGCTACATCGCTGAACCTCTGCTCCCCAGGAGAGTTGTGTCTG
TAACCGCCCTACTGGTCAGTGGCGAGAAATAAAAGCGTGCTTAGAAAAAAAAAAAAAAAA
AAAAAAAAAAAGCTTGTACCTGCCCGGGCGGCCGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGTGTGGCCTGGACAACCGGGCACTGACCACCACCAAGAATTGGAACTGGGGCTTCC
AGACTCGCTGGGGTCCTTGGGTTTGGATTCCTGGATGCAACCTGGGACATCTGGAATGTG
GCTGCCAGGGAAGCTTGGGTTCCAATCGGAATACTTCAGAACATTCCTTGAGAAGATTTC
ACCTCAATCTTGATGAGGGGACTTTTTAGGCTTCCCTTTCTTCCAATTTTCCAGACTTCC
CTGGGATGGGGAGCCCAGCCCCAAACCCCACAGGGCCAGCTCCCTCTTATTTATATTTGC
ACTTGGCATTATTATTTATTTATTTATTTATTATTTTGGTCGCGGCCGAGGTATTTATTC
AGGAGGGCGAGGTGTCCTGGGAGACCCAGCATAAGGGCTGCCTTGGTTCAGATGTGTTTT
CTGTGAAAACGGAGCTGAACTGTAGGTTGCTCCCACCTGGCCTCCTAGCCTCTGTGCCTC
CTTTTGCTTATGTTTTTAAAAACAAATATTTATCTGATCGAGTTGTCTAAATAATGCTGA
TTTGGTGACTAACTTGTCGCTACATCGCTGAACCTCTGCTCCCCAGGAGAGTTGTGTCTG
TAACCGCCCTACTGGTCAGTGGCGAGAAATAAAAGCGTGCTTAGAAAAAAAAAAAAAAAA
AAAAAAAAAAAGCTTGTACCTGCCCGGGCGGCCGCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               36-154, - strand, RNAz p=0.999773
               

               
               352-470, + strand, RNAz p=0.997193

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-154, - strand, RNAz p=0.999773
               

               
               352-470, + strand, RNAz p=0.997193

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000594, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000594, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-652, gnl|bosTau2|chr23 (23243707-23244346)
               

               
               1-652, gnl|Hg17|chr6 (31653469-31654092)
               

               
               1-652, gnl|Mm7|chr17 (33296178-33295589)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-652, gnl|bosTau2|chr23 (23243707-23244346)
               

               
               1-652, gnl|Hg17|chr6 (31653469-31654092)
               

               
               1-652, gnl|Mm7|chr17 (33296178-33295589)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jca (0.11396)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)

	36-154, - strand, RNAz p=0.999773
	352-470, + strand, RNAz p=0.997193

	1-652, gnl\|bosTau2\|chr23 (23243707-23244346)
	1-652, gnl\|Hg17\|chr6 (31653469-31654092)
	1-652, gnl\|Mm7\|chr17 (33296178-33295589)