Non-Coding RNA Search

Ss1.1-unkn-IKU602769080.R1.5

Sequence:


               
               AGAACACCCATCTCATGAGCAGGTTATTTCACTTCTTGAAGGCGAAGGTTTTTGTCCTGT
TACATTTGTCCTAAACGCTAATCTGCTTGTGAATGTCAAGTTAGCATTTTATTCCTCGGA
CAAATATTGGTACTTCTCAACCAATGGATTGCATGGCTTGGGACAGGCAGAAATTATTAT
TCTATTATTATGTTTGCCAAATGAAGATAATATTCCTAAGGACATCTTCAGACTATTTAT
CACCATTTATAAGGATGCTTTAAAAGGAAAATACATAGAAAACTTGGAAATATTACCTTT
ACTGAGACTTTTCTCAGTAGCAAGGATCACGGAGGATTTCTGTTTATTACACCCACTTTT
CAGAAACTTGATGATCTCTTATTACCAAGTAATCCTTTTCTTTGTGGAATTCTTATCCAG
AAGCTAGAGATTCCCTGGGCAAAGGTTTTTCCTATGCGTTTAATGTTGAGATTGGGTACA
GAATATAAAGCATATCCTGCTCCTTTAACAAGTGTCAGAGGCCGAAAACCTCTTTTTGGA
GAAATAGGACACACTATTATGAACTTACTTGTTGACCTTCGAAATTACCAATATACCTTG
CATAATATAGATCAGCTGTTTATTCATATGGAAATGGGGAAAAGTTGCATAAAAATACCT
CGGAAAAAATACAGCGATGTAATGAAAGTAATAAATTCTTCTAATGAACATGTCATTAGT
ATTGGAGCTAGTTTCAGTACAGAAGCAGATTCTCATCTAGTCTGTGTACAGAATGATGGA
GTTTATCAAACACAGGCCAATTGTGCCACTGGCCATCCAAGAAAAGTGACAGGTGCAAGT
TTTGTGGTATTCAATGGAGCTTTAAAAGCATCTTCAGGGTTTCTTGCCAAATCCAGCATA
GTTGAAGATGGCTTAATGGTACAAATTACCCCAGAGACAATGGATGGCTTGCGGCTAGCT
CTACGAGAACAAAAAGACTTTAAAATTACATGTGGGAAAGCTGATGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACACCCATCTCATGAGCAGGTTATTTCACTTCTTGAAGGCGAAGGTTTTTGTCCTGT
TACATTTGTCCTAAACGCTAATCTGCTTGTGAATGTCAAGTTAGCATTTTATTCCTCGGA
CAAATATTGGTACTTCTCAACCAATGGATTGCATGGCTTGGGACAGGCAGAAATTATTAT
TCTATTATTATGTTTGCCAAATGAAGATAATATTCCTAAGGACATCTTCAGACTATTTAT
CACCATTTATAAGGATGCTTTAAAAGGAAAATACATAGAAAACTTGGAAATATTACCTTT
ACTGAGACTTTTCTCAGTAGCAAGGATCACGGAGGATTTCTGTTTATTACACCCACTTTT
CAGAAACTTGATGATCTCTTATTACCAAGTAATCCTTTTCTTTGTGGAATTCTTATCCAG
AAGCTAGAGATTCCCTGGGCAAAGGTTTTTCCTATGCGTTTAATGTTGAGATTGGGTACA
GAATATAAAGCATATCCTGCTCCTTTAACAAGTGTCAGAGGCCGAAAACCTCTTTTTGGA
GAAATAGGACACACTATTATGAACTTACTTGTTGACCTTCGAAATTACCAATATACCTTG
CATAATATAGATCAGCTGTTTATTCATATGGAAATGGGGAAAAGTTGCATAAAAATACCT
CGGAAAAAATACAGCGATGTAATGAAAGTAATAAATTCTTCTAATGAACATGTCATTAGT
ATTGGAGCTAGTTTCAGTACAGAAGCAGATTCTCATCTAGTCTGTGTACAGAATGATGGA
GTTTATCAAACACAGGCCAATTGTGCCACTGGCCATCCAAGAAAAGTGACAGGTGCAAGT
TTTGTGGTATTCAATGGAGCTTTAAAAGCATCTTCAGGGTTTCTTGCCAAATCCAGCATA
GTTGAAGATGGCTTAATGGTACAAATTACCCCAGAGACAATGGATGGCTTGCGGCTAGCT
CTACGAGAACAAAAAGACTTTAAAATTACATGTGGGAAAGCTGATGCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               111-267, gnl|bosTau2|chr7 (52991704-52991548)
               

               
               111-267, gnl|Hg17|chr5 (79782006-79782162)
               

               
               111-267, gnl|Mm7|chr13 (89614259-89614103)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-267, gnl|bosTau2|chr7 (52991704-52991548)
               

               
               111-267, gnl|Hg17|chr5 (79782006-79782162)
               

               
               111-267, gnl|Mm7|chr13 (89614259-89614103)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               ova (0.129132)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	111-267, gnl\|bosTau2\|chr7 (52991704-52991548)
	111-267, gnl\|Hg17\|chr5 (79782006-79782162)
	111-267, gnl\|Mm7\|chr13 (89614259-89614103)