Non-Coding RNA Search

Ss1.1-unkn-LQG602768250.R1.5

Sequence:


               
               TGTACTAACCATCGCCGTTCCCCACTTCATAGAATGTCACATTTAAAGCCCAGGCAAATT
CTACTCTTTCTGTTCATCTGTGTAGGGAACTCTCAACTTTGGTGGGATCAGGGTGGGCAA
CGGACCGACAGAGGAGGATGCTGAGATTATTCAGCATGACCAGCTCTCCACCCATTCAGA
GGACGCAGAGGAGTTCGACTTTGGAGACACCATGGTCCACCAGGCCATCCACACCATTGA
GTACTGCCTGGGCTGCATCTCCAACACCGCCTCCTACCTGCGGCTCTGGGCCCTCAGTCT
TGCTCATGCTCAGCTGTCTGAGGTGCTTTGGACCATGGTGATCCACATCGGCCTGAGCGT
GAAGAGCTTGGCAGGAGGTTTGGCGCTGTTCTTCATCTTTGCCGCCTTCGCCACCCTGAC
CGTGGCCATCCTCCTGATCATGGAGGGCCTCTCAGCCTTCCTCCACGCGCTGCGGTTACA
CTGGTGAGGGGCAGCCCGGGGCCGGGGCCGTGTCCTTAGCTGCACTATGCACTGAGGGTG
GTTTTACTTCTGTCCGGACTCCAGGGACGCTAGGAAGTGTCTGGTTTCACATCCTTACCC
CCAGGGGCCTACTTGGTAGTGAGCCTCAGGAAATGTCCATGGAAGAGCACAGCTCACTTT
CCTGGCCTCCGGCAGGGTTCTCTGGAAGAGTGCTGTCAGAATTCCTCTGTTGTCTTTAGC
CTTCTTTGTTGCTTTTGATTATGGCTTAAAAAATCTGCTGGGTTTTATTTGTTTATTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTACTAACCATCGCCGTTCCCCACTTCATAGAATGTCACATTTAAAGCCCAGGCAAATT
CTACTCTTTCTGTTCATCTGTGTAGGGAACTCTCAACTTTGGTGGGATCAGGGTGGGCAA
CGGACCGACAGAGGAGGATGCTGAGATTATTCAGCATGACCAGCTCTCCACCCATTCAGA
GGACGCAGAGGAGTTCGACTTTGGAGACACCATGGTCCACCAGGCCATCCACACCATTGA
GTACTGCCTGGGCTGCATCTCCAACACCGCCTCCTACCTGCGGCTCTGGGCCCTCAGTCT
TGCTCATGCTCAGCTGTCTGAGGTGCTTTGGACCATGGTGATCCACATCGGCCTGAGCGT
GAAGAGCTTGGCAGGAGGTTTGGCGCTGTTCTTCATCTTTGCCGCCTTCGCCACCCTGAC
CGTGGCCATCCTCCTGATCATGGAGGGCCTCTCAGCCTTCCTCCACGCGCTGCGGTTACA
CTGGTGAGGGGCAGCCCGGGGCCGGGGCCGTGTCCTTAGCTGCACTATGCACTGAGGGTG
GTTTTACTTCTGTCCGGACTCCAGGGACGCTAGGAAGTGTCTGGTTTCACATCCTTACCC
CCAGGGGCCTACTTGGTAGTGAGCCTCAGGAAATGTCCATGGAAGAGCACAGCTCACTTT
CCTGGCCTCCGGCAGGGTTCTCTGGAAGAGTGCTGTCAGAATTCCTCTGTTGTCTTTAGC
CTTCTTTGTTGCTTTTGATTATGGCTTAAAAAATCTGCTGGGTTTTATTTGTTTATTTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6807936|emb|CAB70874.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6807936|emb|CAB70874.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               76-193, + strand, RNAz p=0.978743
               

               
               391-500, - strand, RNAz p=0.748179

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-193, + strand, RNAz p=0.978743
               

               
               391-500, - strand, RNAz p=0.748179

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-193, gnl|bosTau2|chr19 (38861416-38861225)
               

               
               1-193, gnl|Hg17|chr17 (37912982-37913171)
               

               
               1-193, gnl|Mm7|chr11 (101157373-101157564)
               


               
               312-771, gnl|bosTau2|chr19 (38855591-38855140)
               

               
               312-771, gnl|Hg17|chr17 (37919833-37920325)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-193, gnl|bosTau2|chr19 (38861416-38861225)
               

               
               1-193, gnl|Hg17|chr17 (37912982-37913171)
               

               
               1-193, gnl|Mm7|chr11 (101157373-101157564)
               


               
               312-771, gnl|bosTau2|chr19 (38855591-38855140)
               

               
               312-771, gnl|Hg17|chr17 (37919833-37920325)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cst (0.140036)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               pla (0.133672)

	76-193, + strand, RNAz p=0.978743
	391-500, - strand, RNAz p=0.748179

	1-193, gnl\|bosTau2\|chr19 (38861416-38861225)
	1-193, gnl\|Hg17\|chr17 (37912982-37913171)
	1-193, gnl\|Mm7\|chr11 (101157373-101157564)

	312-771, gnl\|bosTau2\|chr19 (38855591-38855140)
	312-771, gnl\|Hg17\|chr17 (37919833-37920325)