Non-Coding RNA Search

Ss1.1-unkn-LZV602768457.R1.5

Sequence:


               
               TGAGATGGATCAAGAAAGGATATAATAAGGAAACTGACCTTTATGAAGGCAGTATTTTAT
ACCCATTTTTTTTACTGAATGGAAAAAAAATGGAGCTTTAAAGATGTTAAGCTCCATTCC
ACATTCCAATATTTCTAAGAAGTATATTTTATCACCTTTTCACATCCCTGAAATCACAAT
ATGCTTACTGCTAATGGAAAACAGAGATTATTTGACTGACTTTTCCCTTTCTAAATGGTA
CATACAATAAGAATGTCATAGCCCATAGTATCTCAGATTCGATAAGTAGCTAATAAATGA
TGATCCTAGAATTTATCCTCTGGGTTGGGTGATTTAAAACCTTAGGTTATTTTCTGGCTG
CAATAATATTCCCCTAAAATACACAAGCAGTTAAGGCACCATACATTTCCTGTTCTTTCC
CCACCTCATTTCATTTATTGTCGTTCAGTTTAGCGTTTGGTCTTGCTTGGATCCATCTGT
ATAGAATTATGCTCCCCAGGAGCCAAATTCCTTCTTTCCTTGTGAACTGGAGGCTGCTTA
ATGTGTTCTGTGAGGTAGACAGAGGAAACATGTTTGTTATCACAAGTTGAACTAACGGTG
ATTGAATGTTCCTGCAGCTGGGTCTTGTTAGAAGTTAAAAACTTGGGCTGTCACATTACT
TTATGTAAACCCTACTTAAGTGGAATGTGAGGGAAAAGACTTGGGAACTTTTTTTATTGC
TCAAGACTATTCTTTGTTGCAATTGAGAAATGTGGGAAATAACTGAAGTGATTAATATTA
CGGATGGTTTCTCAAGCCGTACTTTGAAATTGTTTTCAATTAAATAAATCTTAAGTGTCT
GCTTTGTGCAAACCATGAACTAATTGCTTCAGGGGATAAGATATGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGATGGATCAAGAAAGGATATAATAAGGAAACTGACCTTTATGAAGGCAGTATTTTAT
ACCCATTTTTTTTACTGAATGGAAAAAAAATGGAGCTTTAAAGATGTTAAGCTCCATTCC
ACATTCCAATATTTCTAAGAAGTATATTTTATCACCTTTTCACATCCCTGAAATCACAAT
ATGCTTACTGCTAATGGAAAACAGAGATTATTTGACTGACTTTTCCCTTTCTAAATGGTA
CATACAATAAGAATGTCATAGCCCATAGTATCTCAGATTCGATAAGTAGCTAATAAATGA
TGATCCTAGAATTTATCCTCTGGGTTGGGTGATTTAAAACCTTAGGTTATTTTCTGGCTG
CAATAATATTCCCCTAAAATACACAAGCAGTTAAGGCACCATACATTTCCTGTTCTTTCC
CCACCTCATTTCATTTATTGTCGTTCAGTTTAGCGTTTGGTCTTGCTTGGATCCATCTGT
ATAGAATTATGCTCCCCAGGAGCCAAATTCCTTCTTTCCTTGTGAACTGGAGGCTGCTTA
ATGTGTTCTGTGAGGTAGACAGAGGAAACATGTTTGTTATCACAAGTTGAACTAACGGTG
ATTGAATGTTCCTGCAGCTGGGTCTTGTTAGAAGTTAAAAACTTGGGCTGTCACATTACT
TTATGTAAACCCTACTTAAGTGGAATGTGAGGGAAAAGACTTGGGAACTTTTTTTATTGC
TCAAGACTATTCTTTGTTGCAATTGAGAAATGTGGGAAATAACTGAAGTGATTAATATTA
CGGATGGTTTCTCAAGCCGTACTTTGAAATTGTTTTCAATTAAATAAATCTTAAGTGTCT
GCTTTGTGCAAACCATGAACTAATTGCTTCAGGGGATAAGATATGCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               689-807, - strand, RNAz p=0.688382

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               689-807, - strand, RNAz p=0.688382

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               153-888, gnl|bosTau2|chr6 (44754757-44755495)
               

               
               153-888, gnl|canFam2|chr13 (65504795-65505314)
               

               
               153-888, gnl|echTel1|scaffold_290802 (41548-42065)
               

               
               153-888, gnl|hg17|chr4 (75122671-75123204)
               

               
               153-888, gnl|Hg17|chr4 (75123478-75122710)
               

               
               153-888, gnl|mm7|chr5 (90805541-90806060)
               

               
               153-888, gnl|Mm7|chr5 (90791670-90790978)
               

               
               153-888, gnl|oryCun1|scaffold_210740 (4938-4416)
               

               
               153-888, gnl|panTro1|chr3 (58569695-58569168)
               

               
               153-888, gnl|rheMac2|chr5 (55777021-55776484)
               

               
               153-888, gnl|rn3|chr14 (18750477-18749978)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               153-888, gnl|bosTau2|chr6 (44754757-44755495)
               

               
               153-888, gnl|canFam2|chr13 (65504795-65505314)
               

               
               153-888, gnl|echTel1|scaffold_290802 (41548-42065)
               

               
               153-888, gnl|hg17|chr4 (75122671-75123204)
               

               
               153-888, gnl|Hg17|chr4 (75123478-75122710)
               

               
               153-888, gnl|mm7|chr5 (90805541-90806060)
               

               
               153-888, gnl|Mm7|chr5 (90791670-90790978)
               

               
               153-888, gnl|oryCun1|scaffold_210740 (4938-4416)
               

               
               153-888, gnl|panTro1|chr3 (58569695-58569168)
               

               
               153-888, gnl|rheMac2|chr5 (55777021-55776484)
               

               
               153-888, gnl|rn3|chr14 (18750477-18749978)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.150489)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	153-888, gnl\|bosTau2\|chr6 (44754757-44755495)
	153-888, gnl\|canFam2\|chr13 (65504795-65505314)
	153-888, gnl\|echTel1\|scaffold_290802 (41548-42065)
	153-888, gnl\|hg17\|chr4 (75122671-75123204)
	153-888, gnl\|Hg17\|chr4 (75123478-75122710)
	153-888, gnl\|mm7\|chr5 (90805541-90806060)
	153-888, gnl\|Mm7\|chr5 (90791670-90790978)
	153-888, gnl\|oryCun1\|scaffold_210740 (4938-4416)
	153-888, gnl\|panTro1\|chr3 (58569695-58569168)
	153-888, gnl\|rheMac2\|chr5 (55777021-55776484)
	153-888, gnl\|rn3\|chr14 (18750477-18749978)