Non-Coding RNA Search

Ss1.1-unkn-MI-P-A1-aao-f-12-1-UM.s1.3.5

Sequence:


               
               AGTATTTTTTTCTTTTTAAGGAAAGAGTCTCTGCCTGTGTTAATAGAATAGTTCTAATCT
ACTAGGTTTAAAAACCCAAAGAACATTCTCTGAAGAGACCATACTCTGTTAACGGTTTTG
GCTGGTTAGTGGATGTGGATCACGTACCACCACTCTCAGTTTTATTTTGTCTTCCCTTTT
TTTTTTTTTTCCCTTGCTTTTAAATTAAAAACAAAGCAAAGCAAAATTGAACATGCCATT
GGGAATCAGAAGTCGAGATTTGATTCTCATTAAGATAGATCATTGCACTTTTTGAAAATC
GCTGTGAGATCTGGTAAGTTAGTTACATATCTAAATTCCCATATGTTGATTAATTAAAAA
TAAGGATTTTCATTATTTCATTTTCCTGAAAAGGATTCTCATAGAGCTGTGTGTAGATAA
CTGTACAGAATCACTTTATGTAATTGAATGAAGCAGTTTACCTCTGCATGATTGCATTAT
GGAAGCCTTTTATATATTTTTATATTTTTCAATATACTTAGATTTTACAGTATTAGCTGC
CCTAGTCATGCTATATTTGTTTTTTTTTTAAAATAGAGTTTATAAATATTTGTGCTCAAA
ATACAGATCAATTGAATATTTTTGGTCTTGTTTACAAGATAAATAATACTTTAAAGTGAT
GCAGCCCCTCAAGTGTCTTAGGAAAAAGTCATTGGTGCTACAAAACCTTTCAATATCATT
TTTGAACCTGATGCCAAACTTTGCTAGGCTTAAATCTATGATTGCTCGTGACTTAATCTA
GCAGCGTACTTATAAAAGTGATCTGTGGTGAGTCAGATAAAGAGCCCAGCCTATTAGAAA
CACCCCATAATTTAGCGATATGCAGAATGACCGTACACTAATTTGTGCCCAGCTTCCCAA
AAAGGAAATAGTTTCTTCAGTTTGTCATTAGTGCTTTTGATAAGAGGAACGGTGTTAATC
TGGCCAGAATTTAAAAGTGATACGTTCAGCATGGCTTAGTTTTCCCACATGTCAAATGGA
AGGCTTTTCTAGTCCTAAAATGTGGTATAATCCTGCTCTCTTTAAATTCCTATCTGTCTT
TTACTCAACAGGAGGCAGGGTAATTCTTAAATATTTATAGAACATTTGATGAGTTGTAAA
GAGGTATGTTATTTACGTTCTACAACTTTTGTGTTGATGTGCAGATTGTTTTCTACATCT
GCAAGACTTCATTCCAGCACCTTAGTGAATGTTCTTAGGATACAATTTTTAAGTATCAGC
AAAGCATTCATAGATGTTTACTTTTGATTCTCAGAATCCTGAACCTGTTTGGGGTGTGAT
ATTACTTCAGAACATGTCCGGCACAAGATTTCCTTTAATAGTGGTTTAGTTGAACTCAGT
TTCTGTGGATTGTTGAAACTTAAAACACCAAAGGAGTCCTTGTCTGGAGACTGGATTGTT
CCAGTTTTTAATACCTGTGCCCATAAGTATCCCATTTCACGAATGTGTGTTGGCATGGGG
GAAAAATTCCCTGCTCTTTGAGTGGAGCGAAAGTAATTGGTTAAGCTGTAGCAGCTTTTT
TTGTTTATTTTTTTAAAGTGATAATAAACTTGAACTGAAAATGGTAAAACTTGAACTAGA
AAACTACTCTTGTATGCTTAGAATGTTTATAGTATTACGTGTTTGTGTGAGGTTGTCAAC
ATTTTTATTATTTATAGTTGAATTATGTTTTGTTTGTTAAATATCCATAATGTTTATTAT
TTTTATATTTTGAAAATTTTTTAAATAAAATAGTCTTACTAAAAGCATAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTATTTTTTTCTTTTTAAGGAAAGAGTCTCTGCCTGTGTTAATAGAATAGTTCTAATCT
ACTAGGTTTAAAAACCCAAAGAACATTCTCTGAAGAGACCATACTCTGTTAACGGTTTTG
GCTGGTTAGTGGATGTGGATCACGTACCACCACTCTCAGTTTTATTTTGTCTTCCCTTTT
TTTTTTTTTTCCCTTGCTTTTAAATTAAAAACAAAGCAAAGCAAAATTGAACATGCCATT
GGGAATCAGAAGTCGAGATTTGATTCTCATTAAGATAGATCATTGCACTTTTTGAAAATC
GCTGTGAGATCTGGTAAGTTAGTTACATATCTAAATTCCCATATGTTGATTAATTAAAAA
TAAGGATTTTCATTATTTCATTTTCCTGAAAAGGATTCTCATAGAGCTGTGTGTAGATAA
CTGTACAGAATCACTTTATGTAATTGAATGAAGCAGTTTACCTCTGCATGATTGCATTAT
GGAAGCCTTTTATATATTTTTATATTTTTCAATATACTTAGATTTTACAGTATTAGCTGC
CCTAGTCATGCTATATTTGTTTTTTTTTTAAAATAGAGTTTATAAATATTTGTGCTCAAA
ATACAGATCAATTGAATATTTTTGGTCTTGTTTACAAGATAAATAATACTTTAAAGTGAT
GCAGCCCCTCAAGTGTCTTAGGAAAAAGTCATTGGTGCTACAAAACCTTTCAATATCATT
TTTGAACCTGATGCCAAACTTTGCTAGGCTTAAATCTATGATTGCTCGTGACTTAATCTA
GCAGCGTACTTATAAAAGTGATCTGTGGTGAGTCAGATAAAGAGCCCAGCCTATTAGAAA
CACCCCATAATTTAGCGATATGCAGAATGACCGTACACTAATTTGTGCCCAGCTTCCCAA
AAAGGAAATAGTTTCTTCAGTTTGTCATTAGTGCTTTTGATAAGAGGAACGGTGTTAATC
TGGCCAGAATTTAAAAGTGATACGTTCAGCATGGCTTAGTTTTCCCACATGTCAAATGGA
AGGCTTTTCTAGTCCTAAAATGTGGTATAATCCTGCTCTCTTTAAATTCCTATCTGTCTT
TTACTCAACAGGAGGCAGGGTAATTCTTAAATATTTATAGAACATTTGATGAGTTGTAAA
GAGGTATGTTATTTACGTTCTACAACTTTTGTGTTGATGTGCAGATTGTTTTCTACATCT
GCAAGACTTCATTCCAGCACCTTAGTGAATGTTCTTAGGATACAATTTTTAAGTATCAGC
AAAGCATTCATAGATGTTTACTTTTGATTCTCAGAATCCTGAACCTGTTTGGGGTGTGAT
ATTACTTCAGAACATGTCCGGCACAAGATTTCCTTTAATAGTGGTTTAGTTGAACTCAGT
TTCTGTGGATTGTTGAAACTTAAAACACCAAAGGAGTCCTTGTCTGGAGACTGGATTGTT
CCAGTTTTTAATACCTGTGCCCATAAGTATCCCATTTCACGAATGTGTGTTGGCATGGGG
GAAAAATTCCCTGCTCTTTGAGTGGAGCGAAAGTAATTGGTTAAGCTGTAGCAGCTTTTT
TTGTTTATTTTTTTAAAGTGATAATAAACTTGAACTGAAAATGGTAAAACTTGAACTAGA
AAACTACTCTTGTATGCTTAGAATGTTTATAGTATTACGTGTTTGTGTGAGGTTGTCAAC
ATTTTTATTATTTATAGTTGAATTATGTTTTGTTTGTTAAATATCCATAATGTTTATTAT
TTTTATATTTTGAAAATTTTTTAAATAAAATAGTCTTACTAAAAGCATAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               114-216, - strand, RNAz p=0.799658
               

               
               1464-1581, - strand, RNAz p=0.956536

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               114-216, - strand, RNAz p=0.799658
               

               
               1464-1581, - strand, RNAz p=0.956536

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1787, gnl|bosTau2|chr12 (31165519-31167330)
               

               
               1-1787, gnl|Hg17|chr13 (78785705-78783963)
               

               
               1-1787, gnl|Mm7|chr14 (99538133-99536410)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1787, gnl|bosTau2|chr12 (31165519-31167330)
               

               
               1-1787, gnl|Hg17|chr13 (78785705-78783963)
               

               
               1-1787, gnl|Mm7|chr14 (99538133-99536410)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               thg (0.253582)
               

               
               eru (0.240096)
               

               
               sin (0.174948)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.253582)
               

               
               eru (0.240096)
               

               
               sin (0.174948)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               spc (0.113366)

	114-216, - strand, RNAz p=0.799658
	1464-1581, - strand, RNAz p=0.956536

	1-1787, gnl\|bosTau2\|chr12 (31165519-31167330)
	1-1787, gnl\|Hg17\|chr13 (78785705-78783963)
	1-1787, gnl\|Mm7\|chr14 (99538133-99536410)

	thg (0.253582)
	eru (0.240096)
	sin (0.174948)
	ski (0.146735)
	lnt (0.142308)
	ste (0.135208)
	lyg (0.133103)
	kid (0.129735)
	ese (0.126502)
	tra (0.123092)
	cbl (0.114797)
	spc (0.113366)