Non-Coding RNA Search

Ss1.1-unkn-MI-P-A1-aap-d-04-1-UM.s1.3

Sequence:


               
               TTTTTTTTTTTTTCATAAGATTGTTTAGTCATTCGCAAAAAGCACATGGGAGACAATTCT
CATTACTTTTATCACATACTTCTTCAAAGTGGGCATTGGGGGAACATGTTTTATATTCTT
AGTAGATTGTAAGTCCCCTAAAACTGCTAATAATACATATTTGCATCCCATACGGTACCT
GATTCAGCAGGAGATGCTCAGCCCCTTGCTTCAACTCCAAATATTTATGGAACAAATATT
TGTTTCCATCAACAAATATTTATGGAACATACTGATGAATGAATAAGGAGTTTATGGGTG
ACAAATTTGTCTAGCTTGGTAGCTTTCAGCTGATATCTATAAAAATTTGGGGGGCAGATG
GGGAAGAGGTACAAAATTTGGGAACAAACACAGATTGTGAGCTGATTGAAAGTGTATCAC
TTTGAAGCTTCCTTTGAATTTCCATAGGGTTATGATGGGACAGAAGACTTTTTTTCAAGG
GCAACTGTGTTTCAATTGAGGTTCAGAGATGTGCATTCAGCCTTTCATCTCCTTTACAGA
ACTTCCTTTCTGACATTCTTCCTGGAAGTAGGAAACCTAAAATACTGCATAAATTTGTAT
CATAGTGTTTGGGGTTGATGGCTGAGGGGCATAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTCATAAGATTGTTTAGTCATTCGCAAAAAGCACATGGGAGACAATTCT
CATTACTTTTATCACATACTTCTTCAAAGTGGGCATTGGGGGAACATGTTTTATATTCTT
AGTAGATTGTAAGTCCCCTAAAACTGCTAATAATACATATTTGCATCCCATACGGTACCT
GATTCAGCAGGAGATGCTCAGCCCCTTGCTTCAACTCCAAATATTTATGGAACAAATATT
TGTTTCCATCAACAAATATTTATGGAACATACTGATGAATGAATAAGGAGTTTATGGGTG
ACAAATTTGTCTAGCTTGGTAGCTTTCAGCTGATATCTATAAAAATTTGGGGGGCAGATG
GGGAAGAGGTACAAAATTTGGGAACAAACACAGATTGTGAGCTGATTGAAAGTGTATCAC
TTTGAAGCTTCCTTTGAATTTCCATAGGGTTATGATGGGACAGAAGACTTTTTTTCAAGG
GCAACTGTGTTTCAATTGAGGTTCAGAGATGTGCATTCAGCCTTTCATCTCCTTTACAGA
ACTTCCTTTCTGACATTCTTCCTGGAAGTAGGAAACCTAAAATACTGCATAAATTTGTAT
CATAGTGTTTGGGGTTGATGGCTGAGGGGCATAATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               206-357, + strand, RNAz p=0.999385

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               206-357, + strand, RNAz p=0.999385

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               11-636, gnl|bosTau2|chr3 (22793813-22794441)
               

               
               11-636, gnl|Hg17|chr1 (116183714-116184325)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-636, gnl|bosTau2|chr3 (22793813-22794441)
               

               
               11-636, gnl|Hg17|chr1 (116183714-116184325)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lin (0.145603)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)

	11-636, gnl\|bosTau2\|chr3 (22793813-22794441)
	11-636, gnl\|Hg17\|chr1 (116183714-116184325)