Non-Coding RNA Search

Ss1.1-unkn-MI-P-A1-aap-d-06-1-UM.s1.3

Sequence:


               
               GGATAGGCTTGGCCAGCTGATGTTTACAAACCAGAATTTTGTATTTTAATTTTACAGATT
TTACTACATGATTTTTCTAAATTACCAGGTCAGGTTGTAAAAGTCAGTGCAATAACAAAA
CTTCCTTTTTAAGAGAAAATGATTTCTATCACTTTCCCATTAGCCGTGTAAAGAATCATG
GACAGAACTTACACTACTTTTTACCATGTTTCATCTTGGCATAACGTGGTTATTTTTTAA
AATAGAAACTTCAGTTTTTTGTAAATTTTTTAAAAAAATAATTCATTGAAGCGCATCTCT
GCGGTTCCTCATTCATGTGAATTTTTGCAGCAAACTGTCAACATTCCACAAGAGAACAAA
CATTATACCTCTTCTGATAGTTTTGTGAAGCATGGAGAAATTGCCAATTTTTAAAAACTG
CAAGTTTTCCAAAACTTTTCTGCCAACCTCTGACTCCGAATTCCGTGCTGCTTTGGGTCA
TATACTTGACCTAGTTAGGTGTCCCAGTGATGGAAAAGTATTTTGATATAAACTTTTTCA
AAAGATTCAACCTTTTCTCTATGCCTTGGCCATGTTTTCTTCAGGGTCTTTTCTCAACAG
CGGATGCCTATTCAGTCTGTATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATAGGCTTGGCCAGCTGATGTTTACAAACCAGAATTTTGTATTTTAATTTTACAGATT
TTACTACATGATTTTTCTAAATTACCAGGTCAGGTTGTAAAAGTCAGTGCAATAACAAAA
CTTCCTTTTTAAGAGAAAATGATTTCTATCACTTTCCCATTAGCCGTGTAAAGAATCATG
GACAGAACTTACACTACTTTTTACCATGTTTCATCTTGGCATAACGTGGTTATTTTTTAA
AATAGAAACTTCAGTTTTTTGTAAATTTTTTAAAAAAATAATTCATTGAAGCGCATCTCT
GCGGTTCCTCATTCATGTGAATTTTTGCAGCAAACTGTCAACATTCCACAAGAGAACAAA
CATTATACCTCTTCTGATAGTTTTGTGAAGCATGGAGAAATTGCCAATTTTTAAAAACTG
CAAGTTTTCCAAAACTTTTCTGCCAACCTCTGACTCCGAATTCCGTGCTGCTTTGGGTCA
TATACTTGACCTAGTTAGGTGTCCCAGTGATGGAAAAGTATTTTGATATAAACTTTTTCA
AAAGATTCAACCTTTTCTCTATGCCTTGGCCATGTTTTCTTCAGGGTCTTTTCTCAACAG
CGGATGCCTATTCAGTCTGTATTA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-624, gnl|bosTau2|chr19 (1007224-1007845)
               

               
               1-624, gnl|Hg17|chr17 (50826460-50825835)
               

               
               1-624, gnl|Mm7|chr11 (90386154-90386800)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-624, gnl|bosTau2|chr19 (1007224-1007845)
               

               
               1-624, gnl|Hg17|chr17 (50826460-50825835)
               

               
               1-624, gnl|Mm7|chr11 (90386154-90386800)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nlu (0.191681)
               

               
               nje (0.16592)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               nje (0.16592)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               med (0.116252)

	1-624, gnl\|bosTau2\|chr19 (1007224-1007845)
	1-624, gnl\|Hg17\|chr17 (50826460-50825835)
	1-624, gnl\|Mm7\|chr11 (90386154-90386800)

	nlu (0.191681)
	nje (0.16592)
	nmm (0.132802)
	sug (0.127291)
	med (0.116252)