Ss1.1-unkn-MI-P-A3-abu-b-04-1-UM.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTATGAAGAACTTATCTAGTCATAGTTACTTGTAGTCAGGATTTTAACAGCTTGCAACA GGTAATGTTTTGAATATAAATATCTTTCCAAAGTGTTACTAATGGTAAAGAGATAATTTT CTAGGCTTCTATTCTGCTGCTTGAAGTCAGAACTGCTGATGGAGACAAAGGCACGAAAGT GAGGGAAGACCCCTGATCCTAAAATGAATGCTAGGACTTACATGGATGTAATGCGAGAAC AGCATTTAACTAAAGAAGAGAGAGAAATTAGGCAACAGCTAGCAGAAAAAGCTAAAGCTG GAGAACTAAAAGTCGTCAATGGAGCAGCAGCATCCCAGCTTCCCTCAAAACGAAAACGGC GTTGGTATCAAACAGCTGATCAGACTCCTGGTGCCACTCCAAAAAAGCTATCAAGTTGGG ATCAAGCAGAGACCCCAGGACATACTCCTTCCCTAAGATGGGATGAGACACCAGGACGTG CAAAGGGAAGTGAGACTCCTGGAGCAACCCCAGGCTCAAAAATATGGGATCCTACACCTA GTCACACACCTGCGGGAGCTGCTACTCCTGGACGAGGCGATACACCAGGCCATGCAACAC CAGGCCATGGAGGTGCAACTTCCAGTGCTCGTAAAAACAGATGGGATGAGACCCCCAAAA CAGAAAGAGATACTCCTGGGCATGGAAGTGGATGGGCTGAGACTCCTCGAACAGATCGAG GCGGAGATTCCATTGGTGAAACACCAACTCCTGGAGCCAGTAAAAGAAAGTCACGTTGGG ATGAAACACCAGCTAGTCAGATGGGTGGAAGCACTCCTGTTCTGACCCCTGGAAAAACAC CAATTGGCACACCAGCCATGAACATGGCTACCCCTACTCCAGGTCACATAATGAGTATGA CTCCTGAACAGCTTCAGGCTTGGCGTTGGGAGAGAGAAATTGATGAGAGAAATCGTCCAC TGTCTGATGAAGAATTAGATGCTATGTTCCCAGAAGGATATAAGGTGCTTCCTCCTCCAG CTGGTTATGTTCCTATTCGAACTCCAGCTCGAAAGCTGACAGCAACTCCAACACCTTTGG GTGGTATGACTGGTTTCCACATGCAAACTGAAGATAGAACTATGAAAAGTGTTAATGACC AGCCATCTGGAAATCTTCCGTTTTTAAAACCTGATGATATTCAGTACTTTGATAAACTCT TGGTTGATGTTGATGAATCAACCCTTAGTCCAGAAGAGCAAAAAGAGAGAAAAATAATGA AGTTGCTTTTAAAAATTAAGAATGGAACACCTCCCATGAGAAAGGCTGCATTGCGTCAGA TTACTGATAAAGCTCGTGAGTTTGGAGCTGGTCCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTATGAAGAACTTATCTAGTCATAGTTACTTGTAGTCAGGATTTTAACAGCTTGCAACA GGTAATGTTTTGAATATAAATATCTTTCCAAAGTGTTACTAATGGTAAAGAGATAATTTT CTAGGCTTCTATTCTGCTGCTTGAAGTCAGAACTGCTGATGGAGACAAAGGCACGAAAGT GAGGGAAGACCCCTGATCCTAAAATGAATGCTAGGACTTACATGGATGTAATGCGAGAAC AGCATTTAACTAAAGAAGAGAGAGAAATTAGGCAACAGCTAGCAGAAAAAGCTAAAGCTG GAGAACTAAAAGTCGTCAATGGAGCAGCAGCATCCCAGCTTCCCTCAAAACGAAAACGGC GTTGGTATCAAACAGCTGATCAGACTCCTGGTGCCACTCCAAAAAAGCTATCAAGTTGGG ATCAAGCAGAGACCCCAGGACATACTCCTTCCCTAAGATGGGATGAGACACCAGGACGTG CAAAGGGAAGTGAGACTCCTGGAGCAACCCCAGGCTCAAAAATATGGGATCCTACACCTA GTCACACACCTGCGGGAGCTGCTACTCCTGGACGAGGCGATACACCAGGCCATGCAACAC CAGGCCATGGAGGTGCAACTTCCAGTGCTCGTAAAAACAGATGGGATGAGACCCCCAAAA CAGAAAGAGATACTCCTGGGCATGGAAGTGGATGGGCTGAGACTCCTCGAACAGATCGAG GCGGAGATTCCATTGGTGAAACACCAACTCCTGGAGCCAGTAAAAGAAAGTCACGTTGGG ATGAAACACCAGCTAGTCAGATGGGTGGAAGCACTCCTGTTCTGACCCCTGGAAAAACAC CAATTGGCACACCAGCCATGAACATGGCTACCCCTACTCCAGGTCACATAATGAGTATGA CTCCTGAACAGCTTCAGGCTTGGCGTTGGGAGAGAGAAATTGATGAGAGAAATCGTCCAC TGTCTGATGAAGAATTAGATGCTATGTTCCCAGAAGGATATAAGGTGCTTCCTCCTCCAG CTGGTTATGTTCCTATTCGAACTCCAGCTCGAAAGCTGACAGCAACTCCAACACCTTTGG GTGGTATGACTGGTTTCCACATGCAAACTGAAGATAGAACTATGAAAAGTGTTAATGACC AGCCATCTGGAAATCTTCCGTTTTTAAAACCTGATGATATTCAGTACTTTGATAAACTCT TGGTTGATGTTGATGAATCAACCCTTAGTCCAGAAGAGCAAAAAGAGAGAAAAATAATGA AGTTGCTTTTAAAAATTAAGAATGGAACACCTCCCATGAGAAAGGCTGCATTGCGTCAGA TTACTGATAAAGCTCGTGAGTTTGGAGCTGGTCCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 41-160, + strand, RNAz p=0.729706 | |
| 1115-1204, - strand, RNAz p=0.978808 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 41-160, + strand, RNAz p=0.729706 | |
| 1115-1204, - strand, RNAz p=0.978808 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 1-181, gnl|bosTau2|chr2 (50641637-50641457) | |
| 1-181, gnl|canFam2|chr37 (9944553-9944898) | |
| 1-181, gnl|dasNov1|scaffold_41642 (4520-4868) | |
| 1-181, gnl|echTel1|scaffold_293573 (68082-67735) | |
| 1-181, gnl|fr1|chrUn (268467219-268466862) | |
| 1-181, gnl|galGal2|chr7 (11038619-11038985) | |
| 1-181, gnl|hg17|chr2 (198108940-198109285) | |
| 1-181, gnl|Hg17|chr2 (198109305-198109125) | |
| 1-181, gnl|loxAfr1|scaffold_33792 (15403-15056) | |
| 1-181, gnl|mm7|chr1 (55261991-55262335) | |
| 1-181, gnl|Mm7|chr1 (55262357-55262178) | |
| 1-181, gnl|monDom2|scaffold_2 (107082757-107083110) | |
| 1-181, gnl|oryCun1|scaffold_207751 (54808-54461) | |
| 1-181, gnl|panTro1|chr13 (88061579-88061924) | |
| 1-181, gnl|rheMac2|chr12 (61033399-61033744) | |
| 1-181, gnl|rn3|chr9 (53825027-53825369) | |
| 430-677, gnl|bosTau2|chr2 (50636387-50636140) | |
| 430-677, gnl|canFam2|chr37 (9938861-9939124) | |
| 430-677, gnl|dasNov1|scaffold_41642 (245-504) | |
| 430-677, gnl|echTel1|scaffold_293573 (73515-73248) | |
| 430-677, gnl|fr1|chrUn (268468015-268467749) | |
| 430-677, gnl|galGal2|chr7 (11036693-11036950) | |
| 430-677, gnl|hg17|chr2 (198099993-198100255) | |
| 430-677, gnl|Hg17|chr2 (198100239-198099992) | |
| 430-677, gnl|loxAfr1|scaffold_33792 (20648-20376) | |
| 430-677, gnl|mm7|chr1 (55254782-55255047) | |
| 430-677, gnl|Mm7|chr1 (55255031-55254781) | |
| 430-677, gnl|monDom2|scaffold_2 (107080385-107080642) | |
| 430-677, gnl|oryCun1|scaffold_30144 (230-492) | |
| 430-677, gnl|panTro1|chr13 (88052389-88052651) | |
| 430-677, gnl|rheMac2|chr12 (61022118-61022382) | |
| 430-677, gnl|rn3|chr9 (53818178-53818442) | |
| 430-677, gnl|xenTro1|scaffold_48 (2834430-2834182) | |
| 999-1204, gnl|bosTau2|chr2 (50632898-50632693) | |
| 999-1204, gnl|canFam2|chr37 (9935901-9936131) | |
| 999-1204, gnl|echTel1|scaffold_293573 (76508-76275) | |
| 999-1204, gnl|fr1|chrUn (268468888-268468661) | |
| 999-1204, gnl|galGal2|chr7 (11034372-11034600) | |
| 999-1204, gnl|hg17|chr2 (198095500-198095731) | |
| 999-1204, gnl|Hg17|chr2 (198095709-198095503) | |
| 999-1204, gnl|mm7|chr1 (55250600-55250832) | |
| 999-1204, gnl|Mm7|chr1 (55250808-55250603) | |
| 999-1204, gnl|monDom2|scaffold_2 (107076091-107076326) | |
| 999-1204, gnl|panTro1|chr13 (88047866-88048097) | |
| 999-1204, gnl|rheMac2|chr12 (61017104-61017335) | |
| 999-1204, gnl|rn3|chr9 (53815107-53815339) | |
| 999-1204, gnl|xenTro1|scaffold_48 (2847167-2846957) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-181, gnl|bosTau2|chr2 (50641637-50641457) | |
| 1-181, gnl|canFam2|chr37 (9944553-9944898) | |
| 1-181, gnl|dasNov1|scaffold_41642 (4520-4868) | |
| 1-181, gnl|echTel1|scaffold_293573 (68082-67735) | |
| 1-181, gnl|fr1|chrUn (268467219-268466862) | |
| 1-181, gnl|galGal2|chr7 (11038619-11038985) | |
| 1-181, gnl|hg17|chr2 (198108940-198109285) | |
| 1-181, gnl|Hg17|chr2 (198109305-198109125) | |
| 1-181, gnl|loxAfr1|scaffold_33792 (15403-15056) | |
| 1-181, gnl|mm7|chr1 (55261991-55262335) | |
| 1-181, gnl|Mm7|chr1 (55262357-55262178) | |
| 1-181, gnl|monDom2|scaffold_2 (107082757-107083110) | |
| 1-181, gnl|oryCun1|scaffold_207751 (54808-54461) | |
| 1-181, gnl|panTro1|chr13 (88061579-88061924) | |
| 1-181, gnl|rheMac2|chr12 (61033399-61033744) | |
| 1-181, gnl|rn3|chr9 (53825027-53825369) | |
| 430-677, gnl|bosTau2|chr2 (50636387-50636140) | |
| 430-677, gnl|canFam2|chr37 (9938861-9939124) | |
| 430-677, gnl|dasNov1|scaffold_41642 (245-504) | |
| 430-677, gnl|echTel1|scaffold_293573 (73515-73248) | |
| 430-677, gnl|fr1|chrUn (268468015-268467749) | |
| 430-677, gnl|galGal2|chr7 (11036693-11036950) | |
| 430-677, gnl|hg17|chr2 (198099993-198100255) | |
| 430-677, gnl|Hg17|chr2 (198100239-198099992) | |
| 430-677, gnl|loxAfr1|scaffold_33792 (20648-20376) | |
| 430-677, gnl|mm7|chr1 (55254782-55255047) | |
| 430-677, gnl|Mm7|chr1 (55255031-55254781) | |
| 430-677, gnl|monDom2|scaffold_2 (107080385-107080642) | |
| 430-677, gnl|oryCun1|scaffold_30144 (230-492) | |
| 430-677, gnl|panTro1|chr13 (88052389-88052651) | |
| 430-677, gnl|rheMac2|chr12 (61022118-61022382) | |
| 430-677, gnl|rn3|chr9 (53818178-53818442) | |
| 430-677, gnl|xenTro1|scaffold_48 (2834430-2834182) | |
| 999-1204, gnl|bosTau2|chr2 (50632898-50632693) | |
| 999-1204, gnl|canFam2|chr37 (9935901-9936131) | |
| 999-1204, gnl|echTel1|scaffold_293573 (76508-76275) | |
| 999-1204, gnl|fr1|chrUn (268468888-268468661) | |
| 999-1204, gnl|galGal2|chr7 (11034372-11034600) | |
| 999-1204, gnl|hg17|chr2 (198095500-198095731) | |
| 999-1204, gnl|Hg17|chr2 (198095709-198095503) | |
| 999-1204, gnl|mm7|chr1 (55250600-55250832) | |
| 999-1204, gnl|Mm7|chr1 (55250808-55250603) | |
| 999-1204, gnl|monDom2|scaffold_2 (107076091-107076326) | |
| 999-1204, gnl|panTro1|chr13 (88047866-88048097) | |
| 999-1204, gnl|rheMac2|chr12 (61017104-61017335) | |
| 999-1204, gnl|rn3|chr9 (53815107-53815339) | |
| 999-1204, gnl|xenTro1|scaffold_48 (2847167-2846957) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (0.179824) |