Non-Coding RNA Search

Ss1.1-unkn-MI-P-A3-abu-f-11-1-UM.s1.3

Sequence:


               
               TTTGTATTTTAGTTCCTTCATCTGCTATGCCTCATTCTCTGCTTGGATCTCCGTGATTCT
GCCTGGTTAGAAATTTATATAATTACATTCTTAAAATGTGGTGGTGTCACAGTAAAGCTG
TCATTACTGTCTTTTTTTGTTGTTGTTATTTAAGACCTTTATAGACATTGGTAAACAGCA
GTAATTAGGTACAATATTCATTTATTTTACATTTTTGGTTTTGTTTCACTGTTTATTTTC
AGTAATCCCTGGAGAATTTAGCTTGCAGTCGATTTTGTTTCACTGAGATTTTTCTGCATA
TTTAGTTTTGAATGCAGAAAATTGTACTCATTTGTTAAAACTTTGTTTCCATCATTTAAA
AAATCAGACTTGGACTCTTTTTAGCCTTAAGGTTAATCTCTGATGAGAGCAAAAACTTGA
TGAATACTGGAAGTAATATGGAAATCTAATGTGGAAAGCAATGTGAAAAAATGACCACAA
ATCAGCATTTGTTGTAGTTTTGGTTTGTGTCCTTTTAGAAAAGCTATAGGAACCAAGAAA
GAAAATACAACAGTTTTATTTCTGTGATGCTCCTATTATTTGAAGATTTTTTTTTCCCTA
ATAGAGGCAAACTTCCTGTCAATATTCAAAAATTAAACTCTGGTCAACATTTTTGCTGAT
ATGAAATATGTCTGCTTTATCCATTGTTGAATTTAAAAGGATGTTGGGTTTCCAATCACT
GAAAAAGAGAAATAAGCAAACTCTTCAGCAACATCAGAACATTTCAGCTTCTAAAGTAAA
CAGCTGAGTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTATTTTAGTTCCTTCATCTGCTATGCCTCATTCTCTGCTTGGATCTCCGTGATTCT
GCCTGGTTAGAAATTTATATAATTACATTCTTAAAATGTGGTGGTGTCACAGTAAAGCTG
TCATTACTGTCTTTTTTTGTTGTTGTTATTTAAGACCTTTATAGACATTGGTAAACAGCA
GTAATTAGGTACAATATTCATTTATTTTACATTTTTGGTTTTGTTTCACTGTTTATTTTC
AGTAATCCCTGGAGAATTTAGCTTGCAGTCGATTTTGTTTCACTGAGATTTTTCTGCATA
TTTAGTTTTGAATGCAGAAAATTGTACTCATTTGTTAAAACTTTGTTTCCATCATTTAAA
AAATCAGACTTGGACTCTTTTTAGCCTTAAGGTTAATCTCTGATGAGAGCAAAAACTTGA
TGAATACTGGAAGTAATATGGAAATCTAATGTGGAAAGCAATGTGAAAAAATGACCACAA
ATCAGCATTTGTTGTAGTTTTGGTTTGTGTCCTTTTAGAAAAGCTATAGGAACCAAGAAA
GAAAATACAACAGTTTTATTTCTGTGATGCTCCTATTATTTGAAGATTTTTTTTTCCCTA
ATAGAGGCAAACTTCCTGTCAATATTCAAAAATTAAACTCTGGTCAACATTTTTGCTGAT
ATGAAATATGTCTGCTTTATCCATTGTTGAATTTAAAAGGATGTTGGGTTTCCAATCACT
GAAAAAGAGAAATAAGCAAACTCTTCAGCAACATCAGAACATTTCAGCTTCTAAAGTAAA
CAGCTGAGTGTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               202-385, - strand, RNAz p=0.999986
               

               
               527-618, + strand, RNAz p=0.605176

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-385, - strand, RNAz p=0.999986
               

               
               527-618, + strand, RNAz p=0.605176

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               202-385, DB789163 full-length enriched swine cDNA library, adult adrenal 
(dbj|DB789163.1|), blast E-value=0, identity=100% 
               

               
               202-385, DB813952 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB813952.1|), blast E-value=0, identity=99.46% 
               

               
               202-334, LB01717.CR_M24 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV815802.1|), 
blast E-value=6e-20, identity=84.96% 
               

               
               219-334, LB02813.CR_I15 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV909192.1|), 
blast E-value=2e-19, identity=86.21% 
               

               
               219-334, LB02547.CR_A18 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE344144.1|), 
blast E-value=2e-19, identity=86.21% 
               

               
               219-334, LB02555.CR_B22 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE346549.1|), 
blast E-value=2e-19, identity=86.21%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               202-385, DB789163 full-length enriched swine cDNA library, adult adrenal 
(dbj|DB789163.1|), blast E-value=0, identity=100% 
               

               
               202-385, DB813952 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB813952.1|), blast E-value=0, identity=99.46% 
               

               
               202-334, LB01717.CR_M24 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV815802.1|), 
blast E-value=6e-20, identity=84.96% 
               

               
               219-334, LB02813.CR_I15 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV909192.1|), 
blast E-value=2e-19, identity=86.21% 
               

               
               219-334, LB02547.CR_A18 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE344144.1|), 
blast E-value=2e-19, identity=86.21% 
               

               
               219-334, LB02555.CR_B22 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|EE346549.1|), 
blast E-value=2e-19, identity=86.21%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_006948, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006948, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               163-792, gnl|bosTau2|chr1 (14757324-14757978)
               

               
               163-792, gnl|Hg17|chr21 (14666966-14666278)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               163-792, gnl|bosTau2|chr1 (14757324-14757978)
               

               
               163-792, gnl|Hg17|chr21 (14666966-14666278)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               amn (0.417711)
               

               
               ret (0.257467)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               eep (0.122564)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               ret (0.257467)
               

               
               ece (0.229305)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               eep (0.122564)

	202-385, - strand, RNAz p=0.999986
	527-618, + strand, RNAz p=0.605176

	202-385, DB789163 full-length enriched swine cDNA library, adult adrenal (dbj\|DB789163.1\|), blast E-value=0, identity=100%
	202-385, DB813952 full-length enriched swine cDNA library, adult ovary Sus (dbj\|DB813952.1\|), blast E-value=0, identity=99.46%
	202-334, LB01717.CR_M24 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb\|DV815802.1\|), blast E-value=6e-20, identity=84.96%
	219-334, LB02813.CR_I15 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV909192.1\|), blast E-value=2e-19, identity=86.21%
	219-334, LB02547.CR_A18 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|EE344144.1\|), blast E-value=2e-19, identity=86.21%
	219-334, LB02555.CR_B22 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|EE346549.1\|), blast E-value=2e-19, identity=86.21%

	163-792, gnl\|bosTau2\|chr1 (14757324-14757978)
	163-792, gnl\|Hg17\|chr21 (14666966-14666278)

	amn (0.417711)
	ret (0.257467)
	ece (0.229305)
	fbs (0.175346)
	rec (0.17307)
	fat (0.147427)
	ski (0.146735)
	eep (0.122564)