Non-Coding RNA Search

Ss1.1-unkn-MI-P-E2-ab-e-05-0-UM.s3.3

Sequence:


               
               CATGAACGAAGTAGTTCAGCAGTTCATTGATGTCCTGAGTGCTGCAGTCAAGAGACGTGT
ATTGTGTTTACCTAGGGATGAAAACCTCTCACCAAGTGAAGTTCTGAAAACTAATAATAG
GAAAGCAAATGTTGCAATCCTGTTTTCTGGTGGTGTTGATTCCATGGTTATTGCAGCCCT
TGCTGACCGTCATATTCCTTTAGATGAGCCAATTGATCTTCTTAATGTGGCTTTCATAAT
GAAAGAAAAGAGCACACCAACTCATTTTAACAAAGAAGGGAAAAAACAGAAAAATCATTA
TGAAATACCTCCTGAGGAATCCTCTAAAAATGCTCTCGCAGCTGCTTCTGCTAGTCCTGA
TGAACAATTCAACGTGCCAGATCGAATCACAGGAAGAACAGGACTGAGGGAACTACAAGC
TGCCAACCCTTCCCGGGTTTGGAATTTTGTTGAAATTAATGTTTCTCTGGAAGAACTGCA
AAAATTCAGAAGGACTCGAATATCCCATTTAGTTCAGCCCTTGGATACAGTGTTGGATGA
TAGCATTGGCTGTGCTGTCTGGTTTGCTTCTGGCGGAGTTGGTTGGTTAGTGACCCAGGA
TGAAGCAAAACACTATCAGAGCAGAGCAAAGGTAGTACTTACTGGAATTGGTGCAGATGA
GCAACTTGGCGGTTATTCTCGTCATCGTGTCCGCTTCCAGAAACACGGGTTAGAAGGATT
GAATAAGGAAATCGAGATGGAACTGGGTCGAATTTCTTCTAGAAATCTTGGTCGTGATGA
CAGGGTTATTGGTGATCATGGAAAAGAAGCAAGATTTCCTTTCCTGGATGAAAATGTTGT
CTCCTTTCTAAATTCCCTACCAGTTTGGGAAAAAGCAAACTTGACTTTACCCCGTGGAAT
TGGTGAAAAGCTAATTTTGCGTCTTGCAGCAATGGAACTTGGTCTAACAACCTCTGCTCT
TCTGCCAAAACGGGCTATGCAATTTGGATCCAGAATTGCAAAAATGGAAAAGAATAATGA
GAAGGCATCTGATAAATGTGGAAGGCTCCAAGTCATTTCTTTAGAAAACCTTTCTATTGA
AGAAGAGATTCAATTGTAATATTCCACAGTGTAACAACATTTATTGTTTTAAAAAATAAA
ACACTCTACTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGAACGAAGTAGTTCAGCAGTTCATTGATGTCCTGAGTGCTGCAGTCAAGAGACGTGT
ATTGTGTTTACCTAGGGATGAAAACCTCTCACCAAGTGAAGTTCTGAAAACTAATAATAG
GAAAGCAAATGTTGCAATCCTGTTTTCTGGTGGTGTTGATTCCATGGTTATTGCAGCCCT
TGCTGACCGTCATATTCCTTTAGATGAGCCAATTGATCTTCTTAATGTGGCTTTCATAAT
GAAAGAAAAGAGCACACCAACTCATTTTAACAAAGAAGGGAAAAAACAGAAAAATCATTA
TGAAATACCTCCTGAGGAATCCTCTAAAAATGCTCTCGCAGCTGCTTCTGCTAGTCCTGA
TGAACAATTCAACGTGCCAGATCGAATCACAGGAAGAACAGGACTGAGGGAACTACAAGC
TGCCAACCCTTCCCGGGTTTGGAATTTTGTTGAAATTAATGTTTCTCTGGAAGAACTGCA
AAAATTCAGAAGGACTCGAATATCCCATTTAGTTCAGCCCTTGGATACAGTGTTGGATGA
TAGCATTGGCTGTGCTGTCTGGTTTGCTTCTGGCGGAGTTGGTTGGTTAGTGACCCAGGA
TGAAGCAAAACACTATCAGAGCAGAGCAAAGGTAGTACTTACTGGAATTGGTGCAGATGA
GCAACTTGGCGGTTATTCTCGTCATCGTGTCCGCTTCCAGAAACACGGGTTAGAAGGATT
GAATAAGGAAATCGAGATGGAACTGGGTCGAATTTCTTCTAGAAATCTTGGTCGTGATGA
CAGGGTTATTGGTGATCATGGAAAAGAAGCAAGATTTCCTTTCCTGGATGAAAATGTTGT
CTCCTTTCTAAATTCCCTACCAGTTTGGGAAAAAGCAAACTTGACTTTACCCCGTGGAAT
TGGTGAAAAGCTAATTTTGCGTCTTGCAGCAATGGAACTTGGTCTAACAACCTCTGCTCT
TCTGCCAAAACGGGCTATGCAATTTGGATCCAGAATTGCAAAAATGGAAAAGAATAATGA
GAAGGCATCTGATAAATGTGGAAGGCTCCAAGTCATTTCTTTAGAAAACCTTTCTATTGA
AGAAGAGATTCAATTGTAATATTCCACAGTGTAACAACATTTATTGTTTTAAAAAATAAA
ACACTCTACTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57038911|ref|XP_544203.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57038911|ref|XP_544203.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               846-1152, gnl|bosTau2|chr2 (725930-725624)
               

               
               846-1152, gnl|Hg17|chr2 (190360705-190361028)
               

               
               846-1152, gnl|Mm7|chr1 (53578469-53578169)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               846-1152, gnl|bosTau2|chr2 (725930-725624)
               

               
               846-1152, gnl|Hg17|chr2 (190360705-190361028)
               

               
               846-1152, gnl|Mm7|chr1 (53578469-53578169)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               mgm (0.901713)
               

               
               isp (0.451128)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.901713)
               

               
               isp (0.451128)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               tbr (0.154178)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	846-1152, gnl\|bosTau2\|chr2 (725930-725624)
	846-1152, gnl\|Hg17\|chr2 (190360705-190361028)
	846-1152, gnl\|Mm7\|chr1 (53578469-53578169)

	mgm (0.901713)
	isp (0.451128)
	aor (0.195274)
	nlu (0.191681)
	tbr (0.154178)
	ski (0.146735)
	lyg (0.133103)
	pgl (0.118483)
	cty (0.10408)
	eje (0.0988338)