Non-Coding RNA Search

Ss1.1-unkn-MI-P-H5-aec-h-08-1-UM.s1.ab1.3

Sequence:


               
               TATTAACGTGTGGTCTTTGGAGAGTAAAGTGTCTTCAAAAGACATTCTTTTGAGCGCTCG
CTAAGTGAATGTTGATAGTGGGCTAGGAAAGGACAGTCAAGGAACATGACTTGGCTTGGT
CAGTGGATAAGCAGTCCAGCTGAGAAATCTGATGTTATGTTTGTGGCTCTCATTTAAAGA
AGGACACATGAGAACCTTTCAAAGGGGGCTTCTGTCTTTTCAAAGCTGTAAGCTTTGAAT
TTGCTGTCTTAGTGTTGTAGAGTCCCTTTCTAATTTTAGATAAATTTACACCTCCCTCCC
TGTCTTGGGAGCAAAAATGTAATAGAGATTCCCCAGGCTGCCATCTGCATTTAAATTATT
TCAGTTCTATGAGATTTTTTTGTTATTTTAAAAAAATGTAATCTGAGCACTTTTTTATAT
TCTAAAAGATAGAGGCTGTTATCAGATGAATATATTATTCATTTGATTAAAGTTATTTAG
ATAAGAAATTACTCTTGTTTATGTTTTCTTTCAAACAGCTTATCCTAATTTTTATCCATT
GTGCAAGATATCAGTTGTATATGTTTTCTAAACACATGGGAATGTATTATGTAAATGAAC
CTTTCCAGATTTCTGGACAGTTATATAGTTTGATTTTTATAGGCTTTTATTCAGTATGAA
TAAAGATGAGAGATGAAGACAGGTACTTAAAACGTATCTTCTGTTGCTAACTTTAAAGAA
GGAAATGAAATGGAAACAGTTGGGAAATGTTTGATTAGAACTCACTCAAATGTGTATTAC
TTTCCAAAAGAAAACCAGTGACTGCAAGACAAAACAAATTTGATTGCATGTGATATTTTC
TGCTCTTGTATGTGCTTCTTGAACAGTCCATTTGATAAAGCTTGAATGGAAAAAAATAAA
ACTTTCTATCTGCAGTGGCTCTTGCTGGTCATTACTTAAAAGGCATATGTATTTTCATCT
TTTGAGTTCTTGGGTACATTTTACCTATAGGGAATATGCAGAATAAAGGTAGAACATTAG
CTATATGAATTATGGTTTTTAATTTTCAGTAATTGGAATTTCACATCACATAGTTACCTG
ACAAAGTGTGACGGATTTCTTTTTCAGGAAAAAATTAATCTCACCTTAAGCACAGAGCCT
GGGTTTTCACAAGATACAGATTTAAGTAGCAAACTCAAATTTAAATTTCTTTTAAAAAGT
TTAGTTTTCAGAAAATTTTTCATAAAGTGTATCATTCGCAATAGTCCAGTGTATTTATAG
GGTGCATTTTAAAGTGTTTTGTCTTTCATAGTATAAGGAGATCCTGATAAGTTTATGGCA
AAGTGAATCCTGTTTCCCAGGTGATTTAAATGTTAGTTGTGATCCCCACTGGTGTTTTTT
CTAGAATGCAAATAGCTTTATTGTTTTTCTTATTTGAAATGGACAGTGTTTACCAGGTAA
CACTTAGGCAATGTAGAAAATTGTACCAAAACCAAAAAAAATCACTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTAACGTGTGGTCTTTGGAGAGTAAAGTGTCTTCAAAAGACATTCTTTTGAGCGCTCG
CTAAGTGAATGTTGATAGTGGGCTAGGAAAGGACAGTCAAGGAACATGACTTGGCTTGGT
CAGTGGATAAGCAGTCCAGCTGAGAAATCTGATGTTATGTTTGTGGCTCTCATTTAAAGA
AGGACACATGAGAACCTTTCAAAGGGGGCTTCTGTCTTTTCAAAGCTGTAAGCTTTGAAT
TTGCTGTCTTAGTGTTGTAGAGTCCCTTTCTAATTTTAGATAAATTTACACCTCCCTCCC
TGTCTTGGGAGCAAAAATGTAATAGAGATTCCCCAGGCTGCCATCTGCATTTAAATTATT
TCAGTTCTATGAGATTTTTTTGTTATTTTAAAAAAATGTAATCTGAGCACTTTTTTATAT
TCTAAAAGATAGAGGCTGTTATCAGATGAATATATTATTCATTTGATTAAAGTTATTTAG
ATAAGAAATTACTCTTGTTTATGTTTTCTTTCAAACAGCTTATCCTAATTTTTATCCATT
GTGCAAGATATCAGTTGTATATGTTTTCTAAACACATGGGAATGTATTATGTAAATGAAC
CTTTCCAGATTTCTGGACAGTTATATAGTTTGATTTTTATAGGCTTTTATTCAGTATGAA
TAAAGATGAGAGATGAAGACAGGTACTTAAAACGTATCTTCTGTTGCTAACTTTAAAGAA
GGAAATGAAATGGAAACAGTTGGGAAATGTTTGATTAGAACTCACTCAAATGTGTATTAC
TTTCCAAAAGAAAACCAGTGACTGCAAGACAAAACAAATTTGATTGCATGTGATATTTTC
TGCTCTTGTATGTGCTTCTTGAACAGTCCATTTGATAAAGCTTGAATGGAAAAAAATAAA
ACTTTCTATCTGCAGTGGCTCTTGCTGGTCATTACTTAAAAGGCATATGTATTTTCATCT
TTTGAGTTCTTGGGTACATTTTACCTATAGGGAATATGCAGAATAAAGGTAGAACATTAG
CTATATGAATTATGGTTTTTAATTTTCAGTAATTGGAATTTCACATCACATAGTTACCTG
ACAAAGTGTGACGGATTTCTTTTTCAGGAAAAAATTAATCTCACCTTAAGCACAGAGCCT
GGGTTTTCACAAGATACAGATTTAAGTAGCAAACTCAAATTTAAATTTCTTTTAAAAAGT
TTAGTTTTCAGAAAATTTTTCATAAAGTGTATCATTCGCAATAGTCCAGTGTATTTATAG
GGTGCATTTTAAAGTGTTTTGTCTTTCATAGTATAAGGAGATCCTGATAAGTTTATGGCA
AAGTGAATCCTGTTTCCCAGGTGATTTAAATGTTAGTTGTGATCCCCACTGGTGTTTTTT
CTAGAATGCAAATAGCTTTATTGTTTTTCTTATTTGAAATGGACAGTGTTTACCAGGTAA
CACTTAGGCAATGTAGAAAATTGTACCAAAACCAAAAAAAATCACTTA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               26-1156, gnl|bosTau2|chr26 (28733159-28734291)
               

               
               26-1156, gnl|Hg17|chr10 (123490804-123489684)
               

               
               26-1156, gnl|Mm7|chr7 (126557645-126556515)
               


               
               1158-1486, gnl|bosTau2|chr26 (28734335-28734657)
               

               
               1158-1486, gnl|Hg17|chr10 (123489641-123489312)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-1156, gnl|bosTau2|chr26 (28733159-28734291)
               

               
               26-1156, gnl|Hg17|chr10 (123490804-123489684)
               

               
               26-1156, gnl|Mm7|chr7 (126557645-126556515)
               


               
               1158-1486, gnl|bosTau2|chr26 (28734335-28734657)
               

               
               1158-1486, gnl|Hg17|chr10 (123489641-123489312)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               liv (0.438853)
               

               
               sme (0.305437)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.438853)
               

               
               sme (0.305437)
               

               
               aor (0.195274)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	26-1156, gnl\|bosTau2\|chr26 (28733159-28734291)
	26-1156, gnl\|Hg17\|chr10 (123490804-123489684)
	26-1156, gnl\|Mm7\|chr7 (126557645-126556515)

	1158-1486, gnl\|bosTau2\|chr26 (28734335-28734657)
	1158-1486, gnl\|Hg17\|chr10 (123489641-123489312)

	liv (0.438853)
	sme (0.305437)
	aor (0.195274)
	nlu (0.191681)
	cmu (0.186393)
	gul (0.177588)
	fty (0.17584)
	ton (0.1755)
	tbr (0.154178)
	lun (0.150489)
	isp (0.150376)
	bfe (0.149858)
	fat (0.147427)
	lnt (0.142308)
	pla (0.133672)
	lyg (0.133103)
	ova (0.129132)
	bla (0.124347)
	tra (0.123092)