Non-Coding RNA Search

Ss1.1-unkn-MI-P-NA-aea-d-10-1-UM.s1.ab1.3

Sequence:


               
               ATGTGACTATCGTCCAATTTGCTTTCTTTTGTAGTGACGTTAAATTTGGCTATAAAAGAT
GGACTAGATGTGATATTCATATGGACGTTAATTGAAAAGATTGTTTCTCCTAATGAATGG
GTTTCTGAGAAAGCAGGCAAGATGTTTTTCTGTGTGTTAGGACAGATGTGAAATGGTTTC
TGTAACCATTGTTTGGATTGGAAAACCTTCTGCAGTGGTTATAATAAACATTGGGCCAGA
GTTTGTTAATCTCAACTAACACCTACATTACATCCTCCTTAATTGTTCTTGTTATTATGC
TGTTTTGTGAAGCTGTAGAAAACAAGTGCTTTTTATCTTGAAATTCAACAAATTGAAAGA
ATATGCATAGAATAATGCATTCTATGTAGCCATGTCACTGTGAATAACAATTTCTTGCAT
ATTTAGCCATTTTGATTCCTGTTTGATTTTTACTTCTCTGTTGCTACGCAAAACCGATCA
AAGAAAAGTAAACTTCAGTTTTACAATCTGTATGCCTAAAAGCGGGTACTACCGTTTATT
TTACTGACTTGTTTAAATGATTCGCTTTTGTAAGAATCAGATGGCATTATGCTTGTTGTA
CAATGCCATATTGGTATATGACATAACAGGAAACAGTATTGTATGATATATTTATAAATA
CTATAAAGAAAATATTGTGTTTCATGCATTCAGAAATGGTTGTTAAAATTCTACCAACTG
GTTCGACCTTTGCAGATACCTATGTTTGAGCCTTATCAGCATAGAGTATTTTTAATGTGG
ATATCTCATTCTAAATTCTCTTCCATTGGAAGCAATTGGCATATCACAATACTGACTTTT
CTCTAGTAATACCTGTTTACTTTCAAAAGTAATAGTTGCAGTAAAGAAAAATGTTTAAGG
AATTTGGAAATGCTGTCTTCAGTTCCCATTGCTTAGGATAGAATTAATTTGTTTTTAAAA
TGCATATTGATCACTATAATTCTCAAACAAATTTTTAAATAAACCAGCAAATTGCTGAAA
GAAGGCATTTTATCTAAAATTATTTTAATATGTGGTATAGTGATAACTTCAAATTTAAGA
GTTGCTTTTACAGTTATAAACAATGGAATATGCCCTCTCTGTAATGTCTGGAAATAGAAG
CAGTTTATTGTGAGCTTCTACAGGTATTAATTTTTAAATAGAGTGAGCATGTTGAATTTA
AAATATGAATATCCCCAACAATTTTCAGTTTGTGTTTTGCTTTGGTCGAACTTGGTGTGT
GTTCATCACCCATCAGTTATTTGTGAGGGTGTTTATTCTATATGAATATTGTTTCATGTT
TGTATGGGAAAATTGTAGCTAAACATTTCATTGTCCGAAGTCTGCAAAAGAAGCACAATT
CTATTGCTCTGTCTTGCTTATAGTCATTAAATCATTACTTTTACATATATTGCTGTTACT
TCTGCTTTCTTTAAAGATACAGTAAATGAAGTTTTATGAAACCACAAAATACATATATTT
TTATTTTGACCTAAATTTGTAAAGTCCCATTGTAAGTGTTGTTTCTAATTATAGATGTAA
AATTAAATTTCATTTGTAATTGGAAAAAATCCAATAAAAAGGATATTCATTTAGAAAATA
GCTAAGACTTTAATAAAAATTTGATATGAAAAGCACAACGTGCAGAAGTTTTGGAAAACA
CTATTATGGATTACAACAGGTAAAAGCTAAGGAAAATCCATTGCTGTATTAGTGATGTTG
CTGAAAGAACATGCTTTGTTGTATAATTGCTTGAAAGCCCAACTGAAAGATGTATCTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTGACTATCGTCCAATTTGCTTTCTTTTGTAGTGACGTTAAATTTGGCTATAAAAGAT
GGACTAGATGTGATATTCATATGGACGTTAATTGAAAAGATTGTTTCTCCTAATGAATGG
GTTTCTGAGAAAGCAGGCAAGATGTTTTTCTGTGTGTTAGGACAGATGTGAAATGGTTTC
TGTAACCATTGTTTGGATTGGAAAACCTTCTGCAGTGGTTATAATAAACATTGGGCCAGA
GTTTGTTAATCTCAACTAACACCTACATTACATCCTCCTTAATTGTTCTTGTTATTATGC
TGTTTTGTGAAGCTGTAGAAAACAAGTGCTTTTTATCTTGAAATTCAACAAATTGAAAGA
ATATGCATAGAATAATGCATTCTATGTAGCCATGTCACTGTGAATAACAATTTCTTGCAT
ATTTAGCCATTTTGATTCCTGTTTGATTTTTACTTCTCTGTTGCTACGCAAAACCGATCA
AAGAAAAGTAAACTTCAGTTTTACAATCTGTATGCCTAAAAGCGGGTACTACCGTTTATT
TTACTGACTTGTTTAAATGATTCGCTTTTGTAAGAATCAGATGGCATTATGCTTGTTGTA
CAATGCCATATTGGTATATGACATAACAGGAAACAGTATTGTATGATATATTTATAAATA
CTATAAAGAAAATATTGTGTTTCATGCATTCAGAAATGGTTGTTAAAATTCTACCAACTG
GTTCGACCTTTGCAGATACCTATGTTTGAGCCTTATCAGCATAGAGTATTTTTAATGTGG
ATATCTCATTCTAAATTCTCTTCCATTGGAAGCAATTGGCATATCACAATACTGACTTTT
CTCTAGTAATACCTGTTTACTTTCAAAAGTAATAGTTGCAGTAAAGAAAAATGTTTAAGG
AATTTGGAAATGCTGTCTTCAGTTCCCATTGCTTAGGATAGAATTAATTTGTTTTTAAAA
TGCATATTGATCACTATAATTCTCAAACAAATTTTTAAATAAACCAGCAAATTGCTGAAA
GAAGGCATTTTATCTAAAATTATTTTAATATGTGGTATAGTGATAACTTCAAATTTAAGA
GTTGCTTTTACAGTTATAAACAATGGAATATGCCCTCTCTGTAATGTCTGGAAATAGAAG
CAGTTTATTGTGAGCTTCTACAGGTATTAATTTTTAAATAGAGTGAGCATGTTGAATTTA
AAATATGAATATCCCCAACAATTTTCAGTTTGTGTTTTGCTTTGGTCGAACTTGGTGTGT
GTTCATCACCCATCAGTTATTTGTGAGGGTGTTTATTCTATATGAATATTGTTTCATGTT
TGTATGGGAAAATTGTAGCTAAACATTTCATTGTCCGAAGTCTGCAAAAGAAGCACAATT
CTATTGCTCTGTCTTGCTTATAGTCATTAAATCATTACTTTTACATATATTGCTGTTACT
TCTGCTTTCTTTAAAGATACAGTAAATGAAGTTTTATGAAACCACAAAATACATATATTT
TTATTTTGACCTAAATTTGTAAAGTCCCATTGTAAGTGTTGTTTCTAATTATAGATGTAA
AATTAAATTTCATTTGTAATTGGAAAAAATCCAATAAAAAGGATATTCATTTAGAAAATA
GCTAAGACTTTAATAAAAATTTGATATGAAAAGCACAACGTGCAGAAGTTTTGGAAAACA
CTATTATGGATTACAACAGGTAAAAGCTAAGGAAAATCCATTGCTGTATTAGTGATGTTG
CTGAAAGAACATGCTTTGTTGTATAATTGCTTGAAAGCCCAACTGAAAGATGTATCTGTT

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               511-709, - strand, RNAz p=0.945176
               

               
               887-998, - strand, RNAz p=0.653601
               

               
               1075-1194, - strand, RNAz p=0.657082
               

               
               1230-1349, + strand, RNAz p=0.699796

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               511-709, - strand, RNAz p=0.945176
               

               
               887-998, - strand, RNAz p=0.653601
               

               
               1075-1194, - strand, RNAz p=0.657082
               

               
               1230-1349, + strand, RNAz p=0.699796

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005180, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005180, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1800, gnl|bosTau2|chr1 (58477241-58475443)
               

               
               1-1800, gnl|Hg17|chr10 (22658564-22660378)
               

               
               1-1800, gnl|Mm7|chr2 (18749717-18751474)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1800, gnl|bosTau2|chr1 (58477241-58475443)
               

               
               1-1800, gnl|Hg17|chr10 (22658564-22660378)
               

               
               1-1800, gnl|Mm7|chr2 (18749717-18751474)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               kid (0.908147)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               tra (0.123092)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.908147)
               

               
               ret (0.257467)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               tra (0.123092)

	511-709, - strand, RNAz p=0.945176
	887-998, - strand, RNAz p=0.653601
	1075-1194, - strand, RNAz p=0.657082
	1230-1349, + strand, RNAz p=0.699796

	1-1800, gnl\|bosTau2\|chr1 (58477241-58475443)
	1-1800, gnl\|Hg17\|chr10 (22658564-22660378)
	1-1800, gnl\|Mm7\|chr2 (18749717-18751474)

	kid (0.908147)
	ret (0.257467)
	mgp (0.230681)
	nms (0.213858)
	mcp (0.170648)
	tbr (0.154178)
	fat (0.147427)
	nca (0.136874)
	ste (0.135208)
	tra (0.123092)