Non-Coding RNA Search

Ss1.1-unkn-MI-P-NA-aea-e-12-1-UM.s1.ab1.3

Sequence:


               
               AGAAGGCGTAAAAGGAATACTCCTACCTGCCAAATGTATTGAATGCTGTCTTAGTAGATG
AAAGTGAATTTATTGTATTTCCCTTAAGATTGTGAGGAAGCGTGGATATATAGCATATAG
TAGAATGAGCCATCAGTTTCTTTATAGTACATAAGGTTTGCAATAAATTATTTCATTAGC
TCTAAAACCTTTTCCCTAGATTTCAGTAGGGAGTTGGTTTCTGTTCATCTCTTTGGGTGC
TGTGGTGGTAAATGCTACATTATAAATTAATGTTGGCATGAATTTATGATTAGGCAGAGT
ATGTATACACTTTTTAATGGTAAACGTAAGCTGAATGTATAGTGAATTAGTGTATAGTTT
GACATTTTTGGAATAGGTTTTTAATGTTACATAAAATTTGCTTTTATGCTTGTGTTAACA
TTTTCATCTGTGCCTTTTGGGTAATTCAGTTTTTATGATGAATTTCTGGTGCCTATGAGC
TAGCTATCACCTGAAAGGTGCTTAGAGGTGAAGGTACTGTTCCTAAAAATGCATCACTGT
GATACCTTTCTATCCTTACACTTGCCTCTTCTTTTCTGTTCTCTTTGGATGCAAGTTAAC
TGATTATGTTACTTGTCATGTTTCTACAATTTCGACATCCCCTACACTCTTTGTGTTTCT
GATTTTATAACAATAACTATTTTTGAATACTGGATTCCCAGTCTGTTTTATATGAATACA
ATTTATAAGATATTTTAAGAATAAATAAGATCACGAACATTAATAATAAAACATTTTTGG
TCCTCCCTATTTCCCATTTTCGTATAATGAAGATCATGCTGTCAATCTAAGTAGAAATTA
CTATGAAAAGTGGACATGTGTAAGGCTTTCCTCCCCTAGACTTGGTAGTTAGTCTAGGAT
TTGACTGTAAGGACATCAGAATCTCCCAGAGGTGCTTCCTTCCAGTTCAGGTCGATACCA
CCTACAACCTGAAAAACAAGCTCGGAAAAAGCCACTGTGTGACCTGAAGACACTATTGGA
TGTGGTTGGGTTTAGAGGACAGACTTCAGTTTTAGGTTTATGTCTCCAGCTACTCGTTGT
AAATTTCAGCTAATCCAAAAGTGAGATACTGCTGGTAAGTTCCCAGACAATTCTACCTAA
TAATTTACTTTGAACTAGAGATCAAATATTTGTTCTGGAATTTCTATTGGTAATTATCAA
GCAGTTCAACAAAAAATTGTTAAACGTTTCCATTAGAGTCAAACATCAGTCAAGGACAGC
ACTGACTCTTCAAAGTAAAACTGTTCCATTCCACTTTATACCTAAGAGACTTGACACCGA
CACCACATTCTTTTGAGTTATGCAGGAAAACTGTAAAAGAAATGATATCATAGAGGATGC
AATTCTATGCTTTTAATATGTAGATGACAGGTGTTCTTTTTTCTTATTGGCAATCTTATC
AATATTTCCCTGTTAGAATGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGGCGTAAAAGGAATACTCCTACCTGCCAAATGTATTGAATGCTGTCTTAGTAGATG
AAAGTGAATTTATTGTATTTCCCTTAAGATTGTGAGGAAGCGTGGATATATAGCATATAG
TAGAATGAGCCATCAGTTTCTTTATAGTACATAAGGTTTGCAATAAATTATTTCATTAGC
TCTAAAACCTTTTCCCTAGATTTCAGTAGGGAGTTGGTTTCTGTTCATCTCTTTGGGTGC
TGTGGTGGTAAATGCTACATTATAAATTAATGTTGGCATGAATTTATGATTAGGCAGAGT
ATGTATACACTTTTTAATGGTAAACGTAAGCTGAATGTATAGTGAATTAGTGTATAGTTT
GACATTTTTGGAATAGGTTTTTAATGTTACATAAAATTTGCTTTTATGCTTGTGTTAACA
TTTTCATCTGTGCCTTTTGGGTAATTCAGTTTTTATGATGAATTTCTGGTGCCTATGAGC
TAGCTATCACCTGAAAGGTGCTTAGAGGTGAAGGTACTGTTCCTAAAAATGCATCACTGT
GATACCTTTCTATCCTTACACTTGCCTCTTCTTTTCTGTTCTCTTTGGATGCAAGTTAAC
TGATTATGTTACTTGTCATGTTTCTACAATTTCGACATCCCCTACACTCTTTGTGTTTCT
GATTTTATAACAATAACTATTTTTGAATACTGGATTCCCAGTCTGTTTTATATGAATACA
ATTTATAAGATATTTTAAGAATAAATAAGATCACGAACATTAATAATAAAACATTTTTGG
TCCTCCCTATTTCCCATTTTCGTATAATGAAGATCATGCTGTCAATCTAAGTAGAAATTA
CTATGAAAAGTGGACATGTGTAAGGCTTTCCTCCCCTAGACTTGGTAGTTAGTCTAGGAT
TTGACTGTAAGGACATCAGAATCTCCCAGAGGTGCTTCCTTCCAGTTCAGGTCGATACCA
CCTACAACCTGAAAAACAAGCTCGGAAAAAGCCACTGTGTGACCTGAAGACACTATTGGA
TGTGGTTGGGTTTAGAGGACAGACTTCAGTTTTAGGTTTATGTCTCCAGCTACTCGTTGT
AAATTTCAGCTAATCCAAAAGTGAGATACTGCTGGTAAGTTCCCAGACAATTCTACCTAA
TAATTTACTTTGAACTAGAGATCAAATATTTGTTCTGGAATTTCTATTGGTAATTATCAA
GCAGTTCAACAAAAAATTGTTAAACGTTTCCATTAGAGTCAAACATCAGTCAAGGACAGC
ACTGACTCTTCAAAGTAAAACTGTTCCATTCCACTTTATACCTAAGAGACTTGACACCGA
CACCACATTCTTTTGAGTTATGCAGGAAAACTGTAAAAGAAATGATATCATAGAGGATGC
AATTCTATGCTTTTAATATGTAGATGACAGGTGTTCTTTTTTCTTATTGGCAATCTTATC
AATATTTCCCTGTTAGAATGCAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               112-231, - strand, RNAz p=0.889014

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               112-231, - strand, RNAz p=0.889014

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               70-187, + strand, RNAmicro p=0.99999

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               70-187, + strand, RNAmicro p=0.99999

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-909, gnl|bosTau2|chr1 (11027181-11026267)
               

               
               3-909, gnl|Hg17|chr21 (17861169-17862076)
               

               
               3-909, gnl|Mm7|chr16 (78335096-78335949)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-909, gnl|bosTau2|chr1 (11027181-11026267)
               

               
               3-909, gnl|Hg17|chr21 (17861169-17862076)
               

               
               3-909, gnl|Mm7|chr16 (78335096-78335949)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               rec (0.865351)
               

               
               mga (0.64082)
               

               
               sag (0.548145)
               

               
               mgp (0.461361)
               

               
               pla (0.401016)
               

               
               ret (0.3862)
               

               
               mgm (0.360685)
               

               
               sin (0.349895)
               

               
               csk (0.281492)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.865351)
               

               
               mga (0.64082)
               

               
               sag (0.548145)
               

               
               mgp (0.461361)
               

               
               pla (0.401016)
               

               
               ret (0.3862)
               

               
               mgm (0.360685)
               

               
               sin (0.349895)
               

               
               csk (0.281492)
               

               
               ebs (0.236602)
               

               
               ecc (0.23007)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	3-909, gnl\|bosTau2\|chr1 (11027181-11026267)
	3-909, gnl\|Hg17\|chr21 (17861169-17862076)
	3-909, gnl\|Mm7\|chr16 (78335096-78335949)

	rec (0.865351)
	mga (0.64082)
	sag (0.548145)
	mgp (0.461361)
	pla (0.401016)
	ret (0.3862)
	mgm (0.360685)
	sin (0.349895)
	csk (0.281492)
	ebs (0.236602)
	ecc (0.23007)
	hea (0.204499)
	fli (0.202881)
	cmu (0.186393)
	ill (0.175593)
	eye (0.170503)
	nco (0.161734)
	lin (0.145603)
	lyg (0.133103)
	sug (0.127291)
	spc (0.113366)
	cty (0.10408)