Ss1.1-unkn-MI-P-NA-aea-g-05-1-UM.s1.ab1.3
|
TTTTTTTTTTTTTTTTCAAAAAACAGTATTTTATTTGACATTAAACAACAAACTCTTCAA
TTTGTCTCAGTTGTGGCACATAGACAAGTTTACATTGATTTTTGGTGGTCATCCATGTTG
AACAAAATTTTTCAATCTTCAAAACAACCAAGGCTCAGAGATTCTATGTTTCACATCAGT
TCACAAGTCCAGTGTGTCTTGCATTCACTGGAGTATTTTGGCATAGATTCCCTTTGAGGT
AGGTGAAAGAATAGAGATGAAGCCATTCTCTTTAAAAAAAAAAAAAGATTTGTTCACAAC
TTCATTTATGCTACAAAAATCAGATGATAGCATGTTCTCTTATTCTTGTTTATCAGTAGT
GGTAGTCTTGGATGCCAGAAACTATGAAAGGAAGGCTAAGGTGTTGCTGGCTGATGCTTC
TCAGCAGGCTGGCGCATCTGTGTATTTCCTGTCTAATTCTTCTCATTGGCCTGGAGCATC
TATCATATATTAAACATTATTTTTTTTATTAAACATTATTAACATGTCAGAAAATCCTCT
TCAACTTTGCTCCCTCCAGCAACTATCCTTCGCCATTCATCTATTTCCTTCTCCATCACA
GATGTTACTGTTGGCTTGCCATGTAAACTAAAGTTTGGATGCTTTGAAATATGTATGAAA
TATGTATGACTTACAGTAAACAAAGATTTGAAGATATGTTTCTTTAACTTTAAGGTAACA
GCAACATCAAAAAGAACATCACAAAAGTGGGTTTAAATGGTGGTATAAGAACAGGAAAGG
AAGAAGTGAAAATATCCAAGAGTAGGGAGGAGAACAATAGAAAAGAGCTGGGATTTAGGG
TTATCATCTTGTAATTTCCCTTGGTCTTGGTGCTTCTATCATTCCCAGATTCTGGGCCAT
GGACCTTGAGCTTCCCACTTAATTTAGTCTTGAGATATCTGTCTCTCTTGGGCCTTCTGT
CCATATACACAGGCTTGAGTCTTAGGTCTTTGGCCTTCAGTTTCACTGAGACTTTAGCCT
TCCATCCAACTCCAGTCCAGATCTTGGGCCTTCTATTGGTCTTGGATCATTTCACAGCAC
AATCTCACAGCATCTCACAGCATGGTCTGGCATAAGGAACAGCTCTGCAATGCTTATTTT
GGTAGCTGACACTCTTGCACCTACTGAGAAGGGGTTAGGAAGCCCCTTTGTTACAAACAC
ACAAGAGCCCACACACATACATAGAAAATGTGCAAGGCGAGAGAATTGCATGTAATCAAA
GGGGAGACATAGACACAAGAAGAGGCCAAAATACTCAAAGGTGAATAGGAAGTCAAAAGT
AGAGAAGAAATAAGAGAACAGAGAGATGGATGTTGAAATGGAAAATCACAAAGCACAAAG
AGACACAGAAGCATACAAAGCACGAAAAAGAGAAAATGGCCCAAGAGAGGCAAAAAGAAT
ATGTGAAAAGAGAAATGTGAGATCAGGAGTAGAAACAGCAAAAGGGTAGCCAGTATTAGA
CTAGGTGAAATGTCAAACGAACAAGAAGGGGAATGGATAACAGACAATCAGAATTCACAA
AGAGAAAAAGAAGAAAGGTAGGCATAACAAGAAATGAGCAAAGAGCACATAGTATGTGAC
TCAAGAGACACAAAGTGAACAACAGTGAAAGAGCCAGATCTAGGAGACCAAGGAGAATCA
ATAACAAAATGAAAAAAAGAAACTAGAGAGAGACATCTAAGACGAGACACAGACCGCACA
CTCAGGTACAAAAAAGGAGACAAAGATATACTGAGAAGAAACTAGCAAAAGAATCATGGA
AATGGGTAAGACACAATTTAGAGAAAAAGACCAAAGATGCGCAAGGAAGAAAGAAAGAGA
CAAGCAAACAAATACACACTTAAGAGTTTAAGATAAGCAAAGGCAGACAATCATTCATCC
TGTTTTAAAATGCCAGACCGCCAGGCATGTTGATCTTCCTTTGGTGTGTTCAAATTTCTT
GCTCTCTACACTGCTTCTTAGAAAGATAACGATTTGGCAAATATGAAGGGAACAATCAGG
AGCTAGAGTATGCAGGGTCCTGATTCTTTAGATCCAGGCTGATGATAGATAACTTTGTTC
CATTCCTAGTCAGGTTCACATTCATAGTTATGAGGCTTCTTTCAATTAGCAGGCACAGCA
TAAAAAGATACAACTGTTTTATCTTCTCAAACAGGTTGTTTTTTTGTT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTTTTTTTTTTTTTTTCAAAAAACAGTATTTTATTTGACATTAAACAACAAACTCTTCAA
TTTGTCTCAGTTGTGGCACATAGACAAGTTTACATTGATTTTTGGTGGTCATCCATGTTG
AACAAAATTTTTCAATCTTCAAAACAACCAAGGCTCAGAGATTCTATGTTTCACATCAGT
TCACAAGTCCAGTGTGTCTTGCATTCACTGGAGTATTTTGGCATAGATTCCCTTTGAGGT
AGGTGAAAGAATAGAGATGAAGCCATTCTCTTTAAAAAAAAAAAAAGATTTGTTCACAAC
TTCATTTATGCTACAAAAATCAGATGATAGCATGTTCTCTTATTCTTGTTTATCAGTAGT
GGTAGTCTTGGATGCCAGAAACTATGAAAGGAAGGCTAAGGTGTTGCTGGCTGATGCTTC
TCAGCAGGCTGGCGCATCTGTGTATTTCCTGTCTAATTCTTCTCATTGGCCTGGAGCATC
TATCATATATTAAACATTATTTTTTTTATTAAACATTATTAACATGTCAGAAAATCCTCT
TCAACTTTGCTCCCTCCAGCAACTATCCTTCGCCATTCATCTATTTCCTTCTCCATCACA
GATGTTACTGTTGGCTTGCCATGTAAACTAAAGTTTGGATGCTTTGAAATATGTATGAAA
TATGTATGACTTACAGTAAACAAAGATTTGAAGATATGTTTCTTTAACTTTAAGGTAACA
GCAACATCAAAAAGAACATCACAAAAGTGGGTTTAAATGGTGGTATAAGAACAGGAAAGG
AAGAAGTGAAAATATCCAAGAGTAGGGAGGAGAACAATAGAAAAGAGCTGGGATTTAGGG
TTATCATCTTGTAATTTCCCTTGGTCTTGGTGCTTCTATCATTCCCAGATTCTGGGCCAT
GGACCTTGAGCTTCCCACTTAATTTAGTCTTGAGATATCTGTCTCTCTTGGGCCTTCTGT
CCATATACACAGGCTTGAGTCTTAGGTCTTTGGCCTTCAGTTTCACTGAGACTTTAGCCT
TCCATCCAACTCCAGTCCAGATCTTGGGCCTTCTATTGGTCTTGGATCATTTCACAGCAC
AATCTCACAGCATCTCACAGCATGGTCTGGCATAAGGAACAGCTCTGCAATGCTTATTTT
GGTAGCTGACACTCTTGCACCTACTGAGAAGGGGTTAGGAAGCCCCTTTGTTACAAACAC
ACAAGAGCCCACACACATACATAGAAAATGTGCAAGGCGAGAGAATTGCATGTAATCAAA
GGGGAGACATAGACACAAGAAGAGGCCAAAATACTCAAAGGTGAATAGGAAGTCAAAAGT
AGAGAAGAAATAAGAGAACAGAGAGATGGATGTTGAAATGGAAAATCACAAAGCACAAAG
AGACACAGAAGCATACAAAGCACGAAAAAGAGAAAATGGCCCAAGAGAGGCAAAAAGAAT
ATGTGAAAAGAGAAATGTGAGATCAGGAGTAGAAACAGCAAAAGGGTAGCCAGTATTAGA
CTAGGTGAAATGTCAAACGAACAAGAAGGGGAATGGATAACAGACAATCAGAATTCACAA
AGAGAAAAAGAAGAAAGGTAGGCATAACAAGAAATGAGCAAAGAGCACATAGTATGTGAC
TCAAGAGACACAAAGTGAACAACAGTGAAAGAGCCAGATCTAGGAGACCAAGGAGAATCA
ATAACAAAATGAAAAAAAGAAACTAGAGAGAGACATCTAAGACGAGACACAGACCGCACA
CTCAGGTACAAAAAAGGAGACAAAGATATACTGAGAAGAAACTAGCAAAAGAATCATGGA
AATGGGTAAGACACAATTTAGAGAAAAAGACCAAAGATGCGCAAGGAAGAAAGAAAGAGA
CAAGCAAACAAATACACACTTAAGAGTTTAAGATAAGCAAAGGCAGACAATCATTCATCC
TGTTTTAAAATGCCAGACCGCCAGGCATGTTGATCTTCCTTTGGTGTGTTCAAATTTCTT
GCTCTCTACACTGCTTCTTAGAAAGATAACGATTTGGCAAATATGAAGGGAACAATCAGG
AGCTAGAGTATGCAGGGTCCTGATTCTTTAGATCCAGGCTGATGATAGATAACTTTGTTC
CATTCCTAGTCAGGTTCACATTCATAGTTATGAGGCTTCTTTCAATTAGCAGGCACAGCA
TAAAAAGATACAACTGTTTTATCTTCTCAAACAGGTTGTTTTTTTGTT
|
|
19-397, gnl|bosTau2|chr24 (6314307-6313928) |
|
19-397, gnl|Hg17|chrX (72823516-72823901) |
| |
|
685-992, gnl|bosTau2|chr24 (6308377-6308074) |
|
685-992, gnl|canFam2|chrX (60379627-60380023) |
|
685-992, gnl|echTel1|scaffold_303488 (8424-8046) |
|
685-992, gnl|hg17|chrX (72829243-72829637) |
|
685-992, gnl|Hg17|chrX (72829373-72829651) |
|
685-992, gnl|loxAfr1|scaffold_31002 (4506-4949) |
|
685-992, gnl|mm7|chrX (98793340-98793687) |
|
685-992, gnl|Mm7|chrX (98793455-98793755) |
|
685-992, gnl|oryCun1|scaffold_214795 (42415-42806) |
|
685-992, gnl|panTro1|chrX (75266273-75266667) |
|
685-992, gnl|rheMac2|chrX (72948729-72949138) |
|
685-992, gnl|rn3|chrX (91524709-91525028) |
| |
|
1091-1909, gnl|bosTau2|chr24 (6307922-6307120) |
|
1091-1909, gnl|Hg17|chrX (72830037-72830871) |
|
1091-1909, gnl|Mm7|chrX (98793951-98794733) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
19-397, gnl|bosTau2|chr24 (6314307-6313928) |
|
19-397, gnl|Hg17|chrX (72823516-72823901) |
| |
|
685-992, gnl|bosTau2|chr24 (6308377-6308074) |
|
685-992, gnl|canFam2|chrX (60379627-60380023) |
|
685-992, gnl|echTel1|scaffold_303488 (8424-8046) |
|
685-992, gnl|hg17|chrX (72829243-72829637) |
|
685-992, gnl|Hg17|chrX (72829373-72829651) |
|
685-992, gnl|loxAfr1|scaffold_31002 (4506-4949) |
|
685-992, gnl|mm7|chrX (98793340-98793687) |
|
685-992, gnl|Mm7|chrX (98793455-98793755) |
|
685-992, gnl|oryCun1|scaffold_214795 (42415-42806) |
|
685-992, gnl|panTro1|chrX (75266273-75266667) |
|
685-992, gnl|rheMac2|chrX (72948729-72949138) |
|
685-992, gnl|rn3|chrX (91524709-91525028) |
| |
|
1091-1909, gnl|bosTau2|chr24 (6307922-6307120) |
|
1091-1909, gnl|Hg17|chrX (72830037-72830871) |
|
1091-1909, gnl|Mm7|chrX (98793951-98794733) |
|
aor (1.75747) |
|
thg (1.01433) |
|
spl (0.715922) |
|
spc (0.680195) |
|
ova (0.645661) |
|
cmu (0.55918) |
|
fbs (0.526039) |
|
lnt (0.426925) |
|
csk (0.422238) |
|
col (0.390016) |
|
rec (0.346141) |
|
mcp (0.341297) |
|
lin (0.291206) |
|
fce (0.271592) |
|
ese (0.253004) |
|
cbe (0.239234) |
|
med (0.232504) |
|
mgp (0.230681) |
|
ill (0.175593) |
|
sin (0.174948) |
|
duo (0.172801) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
liv (0.146284) |
|
hyp (0.142837) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
cly (0.120642) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
eje (0.0988338) |
|
aor (1.75747) |
|
thg (1.01433) |
|
spl (0.715922) |
|
spc (0.680195) |
|
ova (0.645661) |
|
cmu (0.55918) |
|
fbs (0.526039) |
|
lnt (0.426925) |
|
csk (0.422238) |
|
col (0.390016) |
|
rec (0.346141) |
|
mcp (0.341297) |
|
lin (0.291206) |
|
fce (0.271592) |
|
ese (0.253004) |
|
cbe (0.239234) |
|
med (0.232504) |
|
mgp (0.230681) |
|
ill (0.175593) |
|
sin (0.174948) |
|
duo (0.172801) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
liv (0.146284) |
|
hyp (0.142837) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
cly (0.120642) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
eje (0.0988338) |
