Non-Coding RNA Search

Ss1.1-unkn-MI-P-NA-aeb-b-01-1-UM.s1.ab1.3

Sequence:


               
               CATGTAACTGAGAAGTATTTTTCATGAATGGTGTATCTCAAAAGGTCTGCTCTTGTTCCC
TGATGATTTTGAAACAGTGATTTTGCATATGCTTTTATCACACCTATTTCAACATTAAGA
AAAATGTTCTTCATATCAGCATTTTCTTGCTATTTTAAATTCATGTTATTTTTTTATTAG
AAAAGAAGCAGGATCCATAATATATTAGACAATGCTTTCTTTTATGGATTTTCCAATTAT
ATTTAATAATTAAATCATAGGTCAAAAGGACTGCTCAAATCAATCAGGCTAGATTTCTAG
TAAGTTGGTGCCTGAAAATTACCTATAAAAGACAACAAAAACTTGGTAAAATCTCATTAC
GCTTGGTACTCTTTAGAGGTTTTTATACCTACCAGTCTATATTTGTCTCTAAGAGACATT
TGAAACAAAGTTAAAATGTCAATTTGTTGTGGAGTTCAGGGCATATGGCAGTACTGGCAC
GGTCACTCAAGATGCATGTTGTGTCATTCAGGTCCCTTGGATGTGTGCTAGGGGTAGATT
TAGCCTTGTAGAGACTAATGTGTTCATTTAATCACTGATTCTGTGTTGTTGTATATAAAA
TGAACAGCTAAAAATTCACCCTTGATGACAAGATTAAAGCAAAAATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGTAACTGAGAAGTATTTTTCATGAATGGTGTATCTCAAAAGGTCTGCTCTTGTTCCC
TGATGATTTTGAAACAGTGATTTTGCATATGCTTTTATCACACCTATTTCAACATTAAGA
AAAATGTTCTTCATATCAGCATTTTCTTGCTATTTTAAATTCATGTTATTTTTTTATTAG
AAAAGAAGCAGGATCCATAATATATTAGACAATGCTTTCTTTTATGGATTTTCCAATTAT
ATTTAATAATTAAATCATAGGTCAAAAGGACTGCTCAAATCAATCAGGCTAGATTTCTAG
TAAGTTGGTGCCTGAAAATTACCTATAAAAGACAACAAAAACTTGGTAAAATCTCATTAC
GCTTGGTACTCTTTAGAGGTTTTTATACCTACCAGTCTATATTTGTCTCTAAGAGACATT
TGAAACAAAGTTAAAATGTCAATTTGTTGTGGAGTTCAGGGCATATGGCAGTACTGGCAC
GGTCACTCAAGATGCATGTTGTGTCATTCAGGTCCCTTGGATGTGTGCTAGGGGTAGATT
TAGCCTTGTAGAGACTAATGTGTTCATTTAATCACTGATTCTGTGTTGTTGTATATAAAA
TGAACAGCTAAAAATTCACCCTTGATGACAAGATTAAAGCAAAAATTA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-642, gnl|bosTau2|chr1 (68918385-68919007)
               

               
               5-642, gnl|Hg17|chr3 (162278713-162279363)
               

               
               5-642, gnl|Mm7|chr3 (69661221-69661765)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-642, gnl|bosTau2|chr1 (68918385-68919007)
               

               
               5-642, gnl|Hg17|chr3 (162278713-162279363)
               

               
               5-642, gnl|Mm7|chr3 (69661221-69661765)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ret (0.257467)
               

               
               aor (0.195274)
               

               
               isp (0.150376)
               

               
               pgl (0.118483)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.257467)
               

               
               aor (0.195274)
               

               
               isp (0.150376)
               

               
               pgl (0.118483)

	5-642, gnl\|bosTau2\|chr1 (68918385-68919007)
	5-642, gnl\|Hg17\|chr3 (162278713-162279363)
	5-642, gnl\|Mm7\|chr3 (69661221-69661765)