Non-Coding RNA Search

Ss1.1-unkn-MI-P-NA-aeb-c-08-1-UM.s1.ab1.3

Sequence:


               
               ATCCTAGCACATGTAGCATCTTCTGAGTTACCCCAGTACCGTCTGATTTCAATTCTGGGT
GATGCCAGGAAGAAGCAATTCCGGTATCTTTTAGAAACCAAAGGGAAAAAGCCTGGTATT
GCCAGTGAAGAAAATAATGATAGCAAGAGACTTGTAGGAGAAAATACAAATCGTGCTACG
CTAAATTATACCACAAGAGACTTTTATAATGAAAAGCTAGAGGAAATAAAAGAAAAAAAG
AAATTCTGCAAGATGTATATCGAGGACCTTGTGAAGGAAGCTACAGAAATCAACATGAAA
AATGAGGCTTTGCAGAAGCTTTGGCCTCAGATGTTCATTGAGCTTGTTAGAGATGCAGTC
ATAGAAATTCGCAATAAAAATTCCTATATGAAGCTTTGCCTACAGCAGATAACTGACCAA
AAATAGAAATGGCTTTTAGTTACAGTTGATATTAGCAGTTTTATGTTTTTAAAGGTTGAA
AAAATGTAGGTTAAACATGTTAAAACAGCAACACTATCCTACCAACTAGAAAGACACGCA
TCAATGCATTACTGCCTACCCTTCTAGTTAAAGGTTAGGAAGGAAAGAAGGAAAGAGAGA
TAAATGGAGGATTAATTTCCTATGTATGTTGACCAAATGACCTTTGGGAAGTAAGCAGTC
TTTAGAGATAGCGTAGGCCTTGGATTGGCCCCACATCTTTGGTTCTTGCTTTGATTGGTG
CCCCCGCTACAGCCCAAAGCACGTAGTGTTTGCTCATGCTTCAGCATGAGTTGCTTCCAA
CTACTTTCAGCCGATAATTTTTAGTTATTTGCCTTTTTTATTTTATGTCATGATTTCAAA
GCCAAAAATATGTTCTTTTTTTATGAGTGAAGAATAAACTTATTAATAAATTAGTTTAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCTAGCACATGTAGCATCTTCTGAGTTACCCCAGTACCGTCTGATTTCAATTCTGGGT
GATGCCAGGAAGAAGCAATTCCGGTATCTTTTAGAAACCAAAGGGAAAAAGCCTGGTATT
GCCAGTGAAGAAAATAATGATAGCAAGAGACTTGTAGGAGAAAATACAAATCGTGCTACG
CTAAATTATACCACAAGAGACTTTTATAATGAAAAGCTAGAGGAAATAAAAGAAAAAAAG
AAATTCTGCAAGATGTATATCGAGGACCTTGTGAAGGAAGCTACAGAAATCAACATGAAA
AATGAGGCTTTGCAGAAGCTTTGGCCTCAGATGTTCATTGAGCTTGTTAGAGATGCAGTC
ATAGAAATTCGCAATAAAAATTCCTATATGAAGCTTTGCCTACAGCAGATAACTGACCAA
AAATAGAAATGGCTTTTAGTTACAGTTGATATTAGCAGTTTTATGTTTTTAAAGGTTGAA
AAAATGTAGGTTAAACATGTTAAAACAGCAACACTATCCTACCAACTAGAAAGACACGCA
TCAATGCATTACTGCCTACCCTTCTAGTTAAAGGTTAGGAAGGAAAGAAGGAAAGAGAGA
TAAATGGAGGATTAATTTCCTATGTATGTTGACCAAATGACCTTTGGGAAGTAAGCAGTC
TTTAGAGATAGCGTAGGCCTTGGATTGGCCCCACATCTTTGGTTCTTGCTTTGATTGGTG
CCCCCGCTACAGCCCAAAGCACGTAGTGTTTGCTCATGCTTCAGCATGAGTTGCTTCCAA
CTACTTTCAGCCGATAATTTTTAGTTATTTGCCTTTTTTATTTTATGTCATGATTTCAAA
GCCAAAAATATGTTCTTTTTTTATGAGTGAAGAATAAACTTATTAATAAATTAGTTTAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61877039|ref|XP_614319.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61877039|ref|XP_614319.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               221-906, gnl|bosTau2|chr10 (12981716-12982388)
               

               
               221-906, gnl|Hg17|chr15 (69128800-69129473)
               

               
               221-906, gnl|Mm7|chr9 (60614820-60614157)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               221-906, gnl|bosTau2|chr10 (12981716-12982388)
               

               
               221-906, gnl|Hg17|chr15 (69128800-69129473)
               

               
               221-906, gnl|Mm7|chr9 (60614820-60614157)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cbe (0.956938)
               

               
               cte (0.29274)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.956938)
               

               
               cte (0.29274)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               pgl (0.118483)

	221-906, gnl\|bosTau2\|chr10 (12981716-12982388)
	221-906, gnl\|Hg17\|chr15 (69128800-69129473)
	221-906, gnl\|Mm7\|chr9 (60614820-60614157)

	cbe (0.956938)
	cte (0.29274)
	ece (0.229305)
	spc (0.226732)
	hyp (0.142837)
	kid (0.129735)
	pgl (0.118483)