Non-Coding RNA Search

Ss1.1-unkn-MI-P-NA-aeb-e-10-1-UM.s1.ab1.3

Sequence:


               
               CCAACCCAGAGTAAGCTTGTTCGCCTGGAGCCATTGACTGAAGCTGAAGCTAGTGAAGCC
ACACTGTTTTATTTATGTGAACTTGCTCCTGCACCTCTGGATAGTGATATGCCACTTTTA
GATAGCTAAATCCCTAAGAAGTGGACTCTATATGTATATATTCATCAAAATGATGAACTA
TTTATTTTAAAGTATCATTTGGTACTTTTTTTTTGTAAATTGCTCTGTTTGGTTTAATCA
GATACTGTGGAATTGTAAAGCACCTTTTGCTTTTCTCACTAACTACACACTCTTGCAAAG
CTTTCAGATGTTACTCAGCTATGTGGGTGCATAATATGTGTTCAGTCACATTATTGGCAT
ATCTTTAAGTTGGATTCAAATGGCCATTTTTTCTCCAGTTATGGTAAATTGGATTTCTTT
TTTGCACATATGCTCATTAACTCCAGTTAAACTTTTTGTTTGTTTGTTTTACTTGTTTAA
TGCTATCTCTTTGCATTGAGTGTTAAGTCACTATAACTAATGGTAGGACTCCTAAAGCTT
TCTCTGTTGCAGTTGCTTTTAATAAGTATTTTTCACTTGGCTTCTTTTTAAAACTGGGAA
CATAAAGTGCCTGTATCTTGTAAAATTTCATTTGTCTTTCTCAGTTCAGAGAAGTTCGTT
CATGTTCAAAAAGGAAGGCAATGTATACTTGAGTGCTTACTGTCTGATTCAGTTTCAGCT
CCATATACATAGAAGAAGGGGATGGGATGATGCAACCTGTCCACCTTATTGGACTAGTTC
TAAGTAAAAGTTTCTGGTTCGTTTCTGTTTTTTTGAAGCATACTATTTAGTAAAATAAAT
ATAATGAATGTTGCGTAAAAAAAACTTATGTGTCGTCGTTGGAGGTGATTCCCACATGTA
ACAGTTTTTCCTTTTCATAGGAAGTAGATAAACAATAAATTTTGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAACCCAGAGTAAGCTTGTTCGCCTGGAGCCATTGACTGAAGCTGAAGCTAGTGAAGCC
ACACTGTTTTATTTATGTGAACTTGCTCCTGCACCTCTGGATAGTGATATGCCACTTTTA
GATAGCTAAATCCCTAAGAAGTGGACTCTATATGTATATATTCATCAAAATGATGAACTA
TTTATTTTAAAGTATCATTTGGTACTTTTTTTTTGTAAATTGCTCTGTTTGGTTTAATCA
GATACTGTGGAATTGTAAAGCACCTTTTGCTTTTCTCACTAACTACACACTCTTGCAAAG
CTTTCAGATGTTACTCAGCTATGTGGGTGCATAATATGTGTTCAGTCACATTATTGGCAT
ATCTTTAAGTTGGATTCAAATGGCCATTTTTTCTCCAGTTATGGTAAATTGGATTTCTTT
TTTGCACATATGCTCATTAACTCCAGTTAAACTTTTTGTTTGTTTGTTTTACTTGTTTAA
TGCTATCTCTTTGCATTGAGTGTTAAGTCACTATAACTAATGGTAGGACTCCTAAAGCTT
TCTCTGTTGCAGTTGCTTTTAATAAGTATTTTTCACTTGGCTTCTTTTTAAAACTGGGAA
CATAAAGTGCCTGTATCTTGTAAAATTTCATTTGTCTTTCTCAGTTCAGAGAAGTTCGTT
CATGTTCAAAAAGGAAGGCAATGTATACTTGAGTGCTTACTGTCTGATTCAGTTTCAGCT
CCATATACATAGAAGAAGGGGATGGGATGATGCAACCTGTCCACCTTATTGGACTAGTTC
TAAGTAAAAGTTTCTGGTTCGTTTCTGTTTTTTTGAAGCATACTATTTAGTAAAATAAAT
ATAATGAATGTTGCGTAAAAAAAACTTATGTGTCGTCGTTGGAGGTGATTCCCACATGTA
ACAGTTTTTCCTTTTCATAGGAAGTAGATAAACAATAAATTTTGCCTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               120-239, + strand, RNAz p=0.573228

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, + strand, RNAz p=0.573228

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_004506, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004506, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-930, gnl|bosTau2|chr9 (14772890-14771953)
               

               
               1-930, gnl|Hg17|chr6 (122794936-122795878)
               

               
               1-930, gnl|Mm7|chr10 (57329926-57330797)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-930, gnl|bosTau2|chr9 (14772890-14771953)
               

               
               1-930, gnl|Hg17|chr6 (122794936-122795878)
               

               
               1-930, gnl|Mm7|chr10 (57329926-57330797)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	1-930, gnl\|bosTau2\|chr9 (14772890-14771953)
	1-930, gnl\|Hg17\|chr6 (122794936-122795878)
	1-930, gnl\|Mm7\|chr10 (57329926-57330797)

	vin (0.332557)
	liv (0.292569)
	mgp (0.230681)
	hea (0.204499)
	sag (0.182715)
	fhi (0.169578)
	fco (0.157208)
	tbr (0.154178)
	isp (0.150376)
	pty (0.142714)
	ssp (0.13552)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	tra (0.123092)
	ldo (0.0970026)