Ss1.1-unkn-MI-P-NA-aeg-h-11-1-UM.s1.ab1.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTCGGCATCATGGCGGCCACGGCCACGATGGCGACCTCAGGCTCGGCGCGGAAGCGGCT GCTGAAAGAGGAAGACATGACCAAAGTGGAATTCGAGACCAGCGAGGAGGTGGACGTGAC TCCCACGTTCGACACTATGGGCCTGCGGGAGGACCTGCTGCGCGGCATCTATGCCTACGG TTTTGAAAAGCCTTCGGCAATCCAGCAGCGAGCTATTAAGCAGATCATCAAGGGGAGAGA TGTCATTGCACAATCTCAGTCTGGTACAGGCAAAACAGCTACCTTCAGTATTTCTGTCCT GCAGTGTTTGGATATTCAGGTTCGTGAAACCCAAGCTTTGATCTTGGCTCCAACGAGAGA GTTAGCTGTACAGATCCAGAAGGGCCTCCTCGCTCTGGGTGACTACATGAACGTCCAGTG CCATGCCTGTATTGGGGGCACCAACGTCGGGGAGGACATCAGGAAACTGGACTATGGACA GCACGTTGTCGCCGGCACACCTGGGCGAGTCTTTGACATGATTCGTCGCAGAAGTTTGAG GACACGTGCCATCAAGATGTTGGTTTTGGATGAGGCTGATGAAATGTTAAATAAAGGGTT CAAAGAGCAGATCTACGACGTGTACAGGTACTTACCCCCGGCCACGCAGGTGGTGCTCAT CAGCGCCACGCTGCCCCACGAGATCTTAGAGATGACCAACAAGTTCATGACCGACCCCAT CCGCATCTTGGTGAAACGTGATGAACTGACTCTGGAAGGCATCAAGCAGTTCTTTGTGGC CGTGGAGAGAGAGGAGTGGAAGTTTGACACCCTGTGTGACCTCTATGACACACTCACCAT CACTCAGGCCGTCATCTTCTGTAACACCAAGAGGAAGGTTGACTGGCTGACGGAGAAGAT GAGGGAAGCCAACTTCACCGTGTCATCCATGCACGGGGACATGCCCCAGAAGGAGCGCGA GTCCATCATGAAGGAGTTCCGCTCGGGTGCCAGCCGCGTGCTCATTTCCACGGACGTCTG GGCCCGGGGGCTGGACGTGCCCCAGGTGTCCCTCATCATCAACTACGACCTGCCCAACAA CAGAGAGCTGTACATACACAGAATCGGGCGATCGGGCCGCTACGGCCGAAAGGGCGTGGC CATAAACTTTGTAAAGAACGACGACATCCGCATCCTCAGAGACATTGAGCAGTACTACTC CACTCAGATTGACGAGATGCCCATGAACGTTGCTGATCTGATCTGAAGAATCTACCCCCT GGAGACTTCCACCTATTTTGTATCAATTTGGAAATATTTAGAGGCAGTTTCTATTTAATG AGGTTTGTGTGACTTCGTCTCAAAAGCCTCCCCAGGATTAGCTTTGGGGAATCTGCCACC TTTTCTTACCCACATGTAAATAATGGTTGCCGTTAAGTCTTTTTCATTAAACATTTAAAA CTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTCGGCATCATGGCGGCCACGGCCACGATGGCGACCTCAGGCTCGGCGCGGAAGCGGCT GCTGAAAGAGGAAGACATGACCAAAGTGGAATTCGAGACCAGCGAGGAGGTGGACGTGAC TCCCACGTTCGACACTATGGGCCTGCGGGAGGACCTGCTGCGCGGCATCTATGCCTACGG TTTTGAAAAGCCTTCGGCAATCCAGCAGCGAGCTATTAAGCAGATCATCAAGGGGAGAGA TGTCATTGCACAATCTCAGTCTGGTACAGGCAAAACAGCTACCTTCAGTATTTCTGTCCT GCAGTGTTTGGATATTCAGGTTCGTGAAACCCAAGCTTTGATCTTGGCTCCAACGAGAGA GTTAGCTGTACAGATCCAGAAGGGCCTCCTCGCTCTGGGTGACTACATGAACGTCCAGTG CCATGCCTGTATTGGGGGCACCAACGTCGGGGAGGACATCAGGAAACTGGACTATGGACA GCACGTTGTCGCCGGCACACCTGGGCGAGTCTTTGACATGATTCGTCGCAGAAGTTTGAG GACACGTGCCATCAAGATGTTGGTTTTGGATGAGGCTGATGAAATGTTAAATAAAGGGTT CAAAGAGCAGATCTACGACGTGTACAGGTACTTACCCCCGGCCACGCAGGTGGTGCTCAT CAGCGCCACGCTGCCCCACGAGATCTTAGAGATGACCAACAAGTTCATGACCGACCCCAT CCGCATCTTGGTGAAACGTGATGAACTGACTCTGGAAGGCATCAAGCAGTTCTTTGTGGC CGTGGAGAGAGAGGAGTGGAAGTTTGACACCCTGTGTGACCTCTATGACACACTCACCAT CACTCAGGCCGTCATCTTCTGTAACACCAAGAGGAAGGTTGACTGGCTGACGGAGAAGAT GAGGGAAGCCAACTTCACCGTGTCATCCATGCACGGGGACATGCCCCAGAAGGAGCGCGA GTCCATCATGAAGGAGTTCCGCTCGGGTGCCAGCCGCGTGCTCATTTCCACGGACGTCTG GGCCCGGGGGCTGGACGTGCCCCAGGTGTCCCTCATCATCAACTACGACCTGCCCAACAA CAGAGAGCTGTACATACACAGAATCGGGCGATCGGGCCGCTACGGCCGAAAGGGCGTGGC CATAAACTTTGTAAAGAACGACGACATCCGCATCCTCAGAGACATTGAGCAGTACTACTC CACTCAGATTGACGAGATGCCCATGAACGTTGCTGATCTGATCTGAAGAATCTACCCCCT GGAGACTTCCACCTATTTTGTATCAATTTGGAAATATTTAGAGGCAGTTTCTATTTAATG AGGTTTGTGTGACTTCGTCTCAAAAGCCTCCCCAGGATTAGCTTTGGGGAATCTGCCACC TTTTCTTACCCACATGTAAATAATGGTTGCCGTTAAGTCTTTTTCATTAAACATTTAAAA CTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 3-181, gnl|bosTau2|chr19 (47237378-47237200) | |
| 3-181, gnl|Hg17|chr17 (75735363-75735188) | |
| 3-181, gnl|Mm7|chr11 (119409049-119408871) | |
| 381-515, gnl|bosTau2|chr19 (47232793-47232659) | |
| 381-515, gnl|canFam2|chr9 (4575873-4575730) | |
| 381-515, gnl|danRer3|chr9 (5400025-5400173) | |
| 381-515, gnl|dasNov1|scaffold_36810 (9416-9268) | |
| 381-515, gnl|echTel1|scaffold_81646 (1082-953) | |
| 381-515, gnl|fr1|chrUn (271635452-271635596) | |
| 381-515, gnl|hg17|chr17 (75728392-75728540) | |
| 381-515, gnl|Hg17|chr17 (75728536-75728402) | |
| 381-515, gnl|loxAfr1|scaffold_88376 (833-685) | |
| 381-515, gnl|mm7|chr11 (119403606-119403754) | |
| 381-515, gnl|Mm7|chr11 (119403750-119403616) | |
| 381-515, gnl|monDom2|scaffold_18 (10933837-10933980) | |
| 381-515, gnl|oryCun1|scaffold_50175 (6424-6292) | |
| 381-515, gnl|panTro1|chr19 (79422039-79422187) | |
| 381-515, gnl|rheMac2|chr16 (75587561-75587709) | |
| 381-515, gnl|rn3|chr6 (79626935-79626803) | |
| 381-515, gnl|tetNig1|chrUn_random (47632401-47632259) | |
| 381-515, gnl|xenTro1|scaffold_658 (42644-42502) | |
| 665-1242, gnl|bosTau2|chr13 (8384099-8383522) | |
| 665-1242, gnl|Hg17|chrX (52745343-52744774) | |
| 665-1242, gnl|Mm7|chr16 (22769216-22771929) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-181, gnl|bosTau2|chr19 (47237378-47237200) | |
| 3-181, gnl|Hg17|chr17 (75735363-75735188) | |
| 3-181, gnl|Mm7|chr11 (119409049-119408871) | |
| 381-515, gnl|bosTau2|chr19 (47232793-47232659) | |
| 381-515, gnl|canFam2|chr9 (4575873-4575730) | |
| 381-515, gnl|danRer3|chr9 (5400025-5400173) | |
| 381-515, gnl|dasNov1|scaffold_36810 (9416-9268) | |
| 381-515, gnl|echTel1|scaffold_81646 (1082-953) | |
| 381-515, gnl|fr1|chrUn (271635452-271635596) | |
| 381-515, gnl|hg17|chr17 (75728392-75728540) | |
| 381-515, gnl|Hg17|chr17 (75728536-75728402) | |
| 381-515, gnl|loxAfr1|scaffold_88376 (833-685) | |
| 381-515, gnl|mm7|chr11 (119403606-119403754) | |
| 381-515, gnl|Mm7|chr11 (119403750-119403616) | |
| 381-515, gnl|monDom2|scaffold_18 (10933837-10933980) | |
| 381-515, gnl|oryCun1|scaffold_50175 (6424-6292) | |
| 381-515, gnl|panTro1|chr19 (79422039-79422187) | |
| 381-515, gnl|rheMac2|chr16 (75587561-75587709) | |
| 381-515, gnl|rn3|chr6 (79626935-79626803) | |
| 381-515, gnl|tetNig1|chrUn_random (47632401-47632259) | |
| 381-515, gnl|xenTro1|scaffold_658 (42644-42502) | |
| 665-1242, gnl|bosTau2|chr13 (8384099-8383522) | |
| 665-1242, gnl|Hg17|chrX (52745343-52744774) | |
| 665-1242, gnl|Mm7|chr16 (22769216-22771929) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| cbr (5.11902) | |
| nje (0.49776) | |
| amn (0.417711) | |
| cty (0.41632) | |
| elu (0.385356) | |
| nco (0.323468) | |
| cga (0.279096) | |
| ese (0.253004) | |
| eep (0.245128) | |
| eru (0.240096) | |
| med (0.232504) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ton (0.1755) | |
| duo (0.172801) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lun (0.150489) | |
| pty (0.142714) | |
| nca (0.136874) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| eje (0.0988338) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (5.11902) | |
| nje (0.49776) | |
| amn (0.417711) | |
| cty (0.41632) | |
| elu (0.385356) | |
| nco (0.323468) | |
| cga (0.279096) | |
| ese (0.253004) | |
| eep (0.245128) | |
| eru (0.240096) | |
| med (0.232504) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| col (0.195008) | |
| ton (0.1755) | |
| duo (0.172801) | |
| eli (0.151814) | |
| cag (0.151194) | |
| lun (0.150489) | |
| pty (0.142714) | |
| nca (0.136874) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| jej (0.0989218) | |
| eje (0.0988338) |