Non-Coding RNA Search

Ss1.1-unkn-MI-P-NA-aeh-f-01-1-UM.s1.ab1.3

Sequence:


               
               ACCTCAGAGCTCCTTTATTCAGGAAAGGATACTGTATTGCACTATTATTGCAGAAGAATA
GATTTAACTGCATCATTATTTTGAAAAACAAGTACTGAAATTGATGTGGTTTAAAGCCAC
TGAAGCACTAACCTTTTTATAGTTATTATATTGTTATAATTTTAAATAAGAGGTTCCTTG
ACAAATTAGTCAGTCTCACTGGTGTGTCATGAGAACTCTAAAACTTTGCTGTCGTCATAT
ATATGAACTAAATCACAACACTGAAAGGGAAAATGCACAATTTTATTTTAAGGTGACACC
AGCAGTTTGCTTCTTTGTAAGTTATGTGGAGTGATGTTTCTTAGAGTAATTCACTGTCTC
TTGCACTTGAAACTTCTGATCTACTTGTCCTGAAGACCAGCTGCTGTAAAGTAAAGCTAG
TCTAAAGATGATGCAGCATTTTTGATGAAAATACCTTCATGTTAAGAGAGGGAAATAGTG
TTGATCTACCCAGACATGGATCTGTGATGTTGACAGCCTTGTTTCAGTTTTAATAGTTGT
TTTGGTTTTCTTAATTGATTTTGTTAATATGTTAATGCAAGTTAGGGAGACATGGCACAA
TATGTATTGCATTATATATATTTATCAGTGATTTACTTAATGTTAACATATAGATAAACA
CTATGAAATAAGTGGTAATACTTGAAAAGAAGCACTTAATACTGTAAGTCTTAGGAAATA
ATGCTTGTAATAAACTTAACTATCATAAACTTACATATCAACAGGCAAAATACAGAATGT
TACATAGTGTAATATGATGTGATTAAATTATAGTTCCCACTATTACATTCCCTGTTCAGA
CCTTGGCTCCAGTTTGGGTGCTTCATATATAAATTACGTGGGACAAGGGACTATGAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTCAGAGCTCCTTTATTCAGGAAAGGATACTGTATTGCACTATTATTGCAGAAGAATA
GATTTAACTGCATCATTATTTTGAAAAACAAGTACTGAAATTGATGTGGTTTAAAGCCAC
TGAAGCACTAACCTTTTTATAGTTATTATATTGTTATAATTTTAAATAAGAGGTTCCTTG
ACAAATTAGTCAGTCTCACTGGTGTGTCATGAGAACTCTAAAACTTTGCTGTCGTCATAT
ATATGAACTAAATCACAACACTGAAAGGGAAAATGCACAATTTTATTTTAAGGTGACACC
AGCAGTTTGCTTCTTTGTAAGTTATGTGGAGTGATGTTTCTTAGAGTAATTCACTGTCTC
TTGCACTTGAAACTTCTGATCTACTTGTCCTGAAGACCAGCTGCTGTAAAGTAAAGCTAG
TCTAAAGATGATGCAGCATTTTTGATGAAAATACCTTCATGTTAAGAGAGGGAAATAGTG
TTGATCTACCCAGACATGGATCTGTGATGTTGACAGCCTTGTTTCAGTTTTAATAGTTGT
TTTGGTTTTCTTAATTGATTTTGTTAATATGTTAATGCAAGTTAGGGAGACATGGCACAA
TATGTATTGCATTATATATATTTATCAGTGATTTACTTAATGTTAACATATAGATAAACA
CTATGAAATAAGTGGTAATACTTGAAAAGAAGCACTTAATACTGTAAGTCTTAGGAAATA
ATGCTTGTAATAAACTTAACTATCATAAACTTACATATCAACAGGCAAAATACAGAATGT
TACATAGTGTAATATGATGTGATTAAATTATAGTTCCCACTATTACATTCCCTGTTCAGA
CCTTGGCTCCAGTTTGGGTGCTTCATATATAAATTACGTGGGACAAGGGACTATGAAATT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               8-898, gnl|bosTau2|chr17 (18572551-18573411)
               

               
               8-898, gnl|Hg17|chr4 (129111949-129112829)
               

               
               8-898, gnl|Mm7|chr3 (40556337-40557150)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-898, gnl|bosTau2|chr17 (18572551-18573411)
               

               
               8-898, gnl|Hg17|chr4 (129111949-129112829)
               

               
               8-898, gnl|Mm7|chr3 (40556337-40557150)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               fco (0.314416)
               

               
               ret (0.257467)
               

               
               fhi (0.169578)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               med (0.116252)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               ret (0.257467)
               

               
               fhi (0.169578)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               med (0.116252)

	8-898, gnl\|bosTau2\|chr17 (18572551-18573411)
	8-898, gnl\|Hg17\|chr4 (129111949-129112829)
	8-898, gnl\|Mm7\|chr3 (40556337-40557150)

	fco (0.314416)
	ret (0.257467)
	fhi (0.169578)
	sug (0.127291)
	tra (0.123092)
	med (0.116252)