Non-Coding RNA Search

Ss1.1-unkn-MI-P-NA-aeh-f-10-1-UM.s1.ab1.3

Sequence:


               
               TTGACAGGATTTTAGTGAGAGGCCATAGCATTTTGCAAATCACTGTGTAGTTTCCTGTTA
AATCATCAAAGCTACCTGTATGTGCTTTATACATTTAATGTCTGTTAGTAAACATTTTTA
GCGTTTTATCTCACTTTTTATCTTCTTATTACATTTGAACATAAATCCTATCTTCCCCAT
TCCCAGCAGTCACAGTTTTACAGCGCAAAATAATTTTAGAAATCGATGATGTGTTGAGTG
TTAAGACAAATGTGTTTAGTAGCATCCATCTGCTGATCAAGAAGACATTGGATCTGATAC
TAGAAAGTGAAATAGATTGTAGCTATAAAAGCATTTTATCAATATAAGTCGAGAAGGAAG
TCGAAAGCTGTGAACTTCTGATATTTTTAATATCAAAACTGTGTTCCCAAATGAGTATTC
GTTTGCTGATTTTGTGTTAATGTTATCATCTCTAATATGTAAGCTCATGCTGATATGAGA
TCTAAATTTTCAACGTGAAGACATCAGTTCCCGTAGCCTTTTTATAACATTAAGACATTT
TGGAAAACAGATGTCATCTTAGAAATTGTATTTTAAAGTGCAAATAAATCATCCCCACTT
GTAAGTCAATGTTTTATGTTTCATTCCCTAGTCTTACAGAATACTCTGTATTATTAGATG
CATGTTTAAATTGATGGATATTCTTGGAATTATCTATTTTCATATTGCTACAACTGGTTT
ACCTACAATGTGCAATTGAATTGTTATTTAAATAAATTACATATGATGGAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGACAGGATTTTAGTGAGAGGCCATAGCATTTTGCAAATCACTGTGTAGTTTCCTGTTA
AATCATCAAAGCTACCTGTATGTGCTTTATACATTTAATGTCTGTTAGTAAACATTTTTA
GCGTTTTATCTCACTTTTTATCTTCTTATTACATTTGAACATAAATCCTATCTTCCCCAT
TCCCAGCAGTCACAGTTTTACAGCGCAAAATAATTTTAGAAATCGATGATGTGTTGAGTG
TTAAGACAAATGTGTTTAGTAGCATCCATCTGCTGATCAAGAAGACATTGGATCTGATAC
TAGAAAGTGAAATAGATTGTAGCTATAAAAGCATTTTATCAATATAAGTCGAGAAGGAAG
TCGAAAGCTGTGAACTTCTGATATTTTTAATATCAAAACTGTGTTCCCAAATGAGTATTC
GTTTGCTGATTTTGTGTTAATGTTATCATCTCTAATATGTAAGCTCATGCTGATATGAGA
TCTAAATTTTCAACGTGAAGACATCAGTTCCCGTAGCCTTTTTATAACATTAAGACATTT
TGGAAAACAGATGTCATCTTAGAAATTGTATTTTAAAGTGCAAATAAATCATCCCCACTT
GTAAGTCAATGTTTTATGTTTCATTCCCTAGTCTTACAGAATACTCTGTATTATTAGATG
CATGTTTAAATTGATGGATATTCTTGGAATTATCTATTTTCATATTGCTACAACTGGTTT
ACCTACAATGTGCAATTGAATTGTTATTTAAATAAATTACATATGATGGAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               7-776, gnl|bosTau2|chr8 (13976949-13976182)
               

               
               7-776, gnl|Hg17|chr9 (15154427-15153615)
               

               
               7-776, gnl|Mm7|chr4 (82624725-82624021)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-776, gnl|bosTau2|chr8 (13976949-13976182)
               

               
               7-776, gnl|Hg17|chr9 (15154427-15153615)
               

               
               7-776, gnl|Mm7|chr4 (82624725-82624021)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ret (0.514933)
               

               
               col (0.390016)
               

               
               fco (0.314416)
               

               
               aor (0.195274)
               

               
               fat (0.147427)
               

               
               kid (0.129735)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.514933)
               

               
               col (0.390016)
               

               
               fco (0.314416)
               

               
               aor (0.195274)
               

               
               fat (0.147427)
               

               
               kid (0.129735)

	7-776, gnl\|bosTau2\|chr8 (13976949-13976182)
	7-776, gnl\|Hg17\|chr9 (15154427-15153615)
	7-776, gnl\|Mm7\|chr4 (82624725-82624021)

	ret (0.514933)
	col (0.390016)
	fco (0.314416)
	aor (0.195274)
	fat (0.147427)
	kid (0.129735)