Ss1.1-unkn-MI-P-NA-aek-b-11-1-UM.s1.ab1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGGTTCCTGGGGGCGGCTGCTGCCAGTCTTCCCGAGGCTCGGGGTCCGGAGCGCTGAG CTCCTTGTTCCCTCGGCTGCGGTGGGATCAGGCAGCTGCGCAGCCTCCGCTGCTCCCGGC CGTGCGGGCCTCGCGGAGCATGTCGGAGGAGAGCGACATGGAGAAAGCCATCAAGGAAAC CTCCATTTTAGAAGAATACAATATCAATTGGACCCAGAAGCTGGGCGCTGGAATTAGTGG TCCAGTTAGAGTCTGTGTGAAGAAATCTACCCAAGAACGGTTTGCACTAAAAATTCTTTT TGATCGTCCAAAAGCTAGAAATGAGGTACGTCTGCACATGATGTGTGCAACACACCCCAA TATAGTGCAAATTATTGAAGTGTTTGCTAATAGTGTACAGTTTCCTCATGAATCCAGCCC CAGGGCTCGACTCTTAATTGTAATGGAGATGATGGAAGGGGGAGAGCTATTTCACAGAAT CAGCCAGCACCGGCACTTTACAGAGAAGCAAGCCAGCCAAGTAACAAAGCAGATAGCTTT GGCTCTACAACACTGTCACTTGTTAAACATCGCGCACAGAGACCTCAAGCCTGAAAATCT GCTTTTCAAGGATAACTCTTTGGATGCCCCAGTGAAGTTATGTGACTTTGGATTTGCCAA AATTGACCAAGGTGACTTGATGACACCGCAGTTCACCCCATATTATGTAGCACCTCAGGT ACTAGAGGCACAGAGAAGGCATCAGAAGGAGAAATCTGGCATCATACCTACCTCGCCAAC ACCCTACACTTATAACAAGAGCTGTGATTTGTGGTCCCTAGGGGTGATTATCTACGTGAT GCTGTGTGGATACCCTCCTTTTTACTCCAAACACCATAGCCGGACCATCCCAAAGGACAT GCGGAAAAAAATCATGACAGGCAGTTTTGAGTTCCCAGAAGAAGAATGGAGCCAGATCTC TGAGATGGCCAAAGATGTAGTGAGAAAGCTCTTGAAGGTCAAACCAGAGGAAAGACTTAC CATCGAGGGAGTGTTGGACCACCCCTGGCTCAACTCTACTGAGGCTCTGGATAATGTGCT ACCCTCTGCTCAACTGATGATGGATAAGGCAGTGGTTGCAGGAATCCAGCAGGCCCATGC GGAACAGTTGGCCAACATGCGAATTCAGGATTTGAAAGTCAGCCTCAAACCCCTGCATTC TGTGAACAACCCCATTCTGCGGAAGAGGAAATTACTCGGCACCAAGCCAAAGGATGGTAT TTATATCCATGACCGTGAGAATGGAGCTGAGGATTCAAATGTTGCCTTGGAAAAGCTTCG AGATGTGATTGCTCAGTGTATTCTCCCCCAGGCTGGAGAGAATGAAGATGAAAAGCTGAA TGAAGTAGTGCAGGAAGCTTGGAAGTATAACCGGGAATGCAAACTCCTAAGAGATACTCT GCAAAGCTTCAGCTGGAATGGTCGTGGATTCACAGATAAAGTAGATCGACTAAAACTGGC AGAAATTGTGAAGCAAGTGATAGAAGAGCAGACCACATCCCATGAATCCCAATAACTACA GCTTCAGACTTTGTTTTTTAACAGTTTGAAAAATTATTCATTAATGTATAAAGAAATTTT TATGTAAATTAATAAATCATAATTTCATTTCCACATTGCTTAAAGATGCTGTATAAAATT AGATACAGGATATACTAATAGTTCACTTGTTTGTTTTTAAGAAAAGCTCAGTTCTTAGAG ATATATTATTACTTTATTATTTAGTGGTATGTTGTAAAGCTGACAGATGGTATTGTCGAG CAAGATTATTTTATTTGTAATAAAGTATACAAAAACCATTTGCCAGTGGTAGGCAAAGGA CCAACTATACTGACCTTTCTTCTTAGTAAAGAGTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGGTTCCTGGGGGCGGCTGCTGCCAGTCTTCCCGAGGCTCGGGGTCCGGAGCGCTGAG CTCCTTGTTCCCTCGGCTGCGGTGGGATCAGGCAGCTGCGCAGCCTCCGCTGCTCCCGGC CGTGCGGGCCTCGCGGAGCATGTCGGAGGAGAGCGACATGGAGAAAGCCATCAAGGAAAC CTCCATTTTAGAAGAATACAATATCAATTGGACCCAGAAGCTGGGCGCTGGAATTAGTGG TCCAGTTAGAGTCTGTGTGAAGAAATCTACCCAAGAACGGTTTGCACTAAAAATTCTTTT TGATCGTCCAAAAGCTAGAAATGAGGTACGTCTGCACATGATGTGTGCAACACACCCCAA TATAGTGCAAATTATTGAAGTGTTTGCTAATAGTGTACAGTTTCCTCATGAATCCAGCCC CAGGGCTCGACTCTTAATTGTAATGGAGATGATGGAAGGGGGAGAGCTATTTCACAGAAT CAGCCAGCACCGGCACTTTACAGAGAAGCAAGCCAGCCAAGTAACAAAGCAGATAGCTTT GGCTCTACAACACTGTCACTTGTTAAACATCGCGCACAGAGACCTCAAGCCTGAAAATCT GCTTTTCAAGGATAACTCTTTGGATGCCCCAGTGAAGTTATGTGACTTTGGATTTGCCAA AATTGACCAAGGTGACTTGATGACACCGCAGTTCACCCCATATTATGTAGCACCTCAGGT ACTAGAGGCACAGAGAAGGCATCAGAAGGAGAAATCTGGCATCATACCTACCTCGCCAAC ACCCTACACTTATAACAAGAGCTGTGATTTGTGGTCCCTAGGGGTGATTATCTACGTGAT GCTGTGTGGATACCCTCCTTTTTACTCCAAACACCATAGCCGGACCATCCCAAAGGACAT GCGGAAAAAAATCATGACAGGCAGTTTTGAGTTCCCAGAAGAAGAATGGAGCCAGATCTC TGAGATGGCCAAAGATGTAGTGAGAAAGCTCTTGAAGGTCAAACCAGAGGAAAGACTTAC CATCGAGGGAGTGTTGGACCACCCCTGGCTCAACTCTACTGAGGCTCTGGATAATGTGCT ACCCTCTGCTCAACTGATGATGGATAAGGCAGTGGTTGCAGGAATCCAGCAGGCCCATGC GGAACAGTTGGCCAACATGCGAATTCAGGATTTGAAAGTCAGCCTCAAACCCCTGCATTC TGTGAACAACCCCATTCTGCGGAAGAGGAAATTACTCGGCACCAAGCCAAAGGATGGTAT TTATATCCATGACCGTGAGAATGGAGCTGAGGATTCAAATGTTGCCTTGGAAAAGCTTCG AGATGTGATTGCTCAGTGTATTCTCCCCCAGGCTGGAGAGAATGAAGATGAAAAGCTGAA TGAAGTAGTGCAGGAAGCTTGGAAGTATAACCGGGAATGCAAACTCCTAAGAGATACTCT GCAAAGCTTCAGCTGGAATGGTCGTGGATTCACAGATAAAGTAGATCGACTAAAACTGGC AGAAATTGTGAAGCAAGTGATAGAAGAGCAGACCACATCCCATGAATCCCAATAACTACA GCTTCAGACTTTGTTTTTTAACAGTTTGAAAAATTATTCATTAATGTATAAAGAAATTTT TATGTAAATTAATAAATCATAATTTCATTTCCACATTGCTTAAAGATGCTGTATAAAATT AGATACAGGATATACTAATAGTTCACTTGTTTGTTTTTAAGAAAAGCTCAGTTCTTAGAG ATATATTATTACTTTATTATTTAGTGGTATGTTGTAAAGCTGACAGATGGTATTGTCGAG CAAGATTATTTTATTTGTAATAAAGTATACAAAAACCATTTGCCAGTGGTAGGCAAAGGA CCAACTATACTGACCTTTCTTCTTAGTAAAGAGTTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 4-179, gnl|bosTau2|chr17 (38744274-38744446) | |
| 4-179, gnl|Hg17|chr12 (110743122-110743297) | |
| 4-179, gnl|Mm7|chr5 (120779306-120779146) | |
| 421-532, gnl|bosTau2|chr17 (38754659-38754770) | |
| 421-532, gnl|canFam2|chr26 (12415180-12415327) | |
| 421-532, gnl|canFam2|chr28 (23467696-23467776) | |
| 421-532, gnl|danRer3|chrUn (71109845-71109695) | |
| 421-532, gnl|danRer3|chrUn (71109831-71109710) | |
| 421-532, gnl|echTel1|scaffold_282325 (138067-137963) | |
| 421-532, gnl|echTel1|scaffold_318758 (201101-200951) | |
| 421-532, gnl|fr1|chrUn (46371235-46371085) | |
| 421-532, gnl|fr1|chrUn (46371309-46371117) | |
| 421-532, gnl|galGal2|chr15 (6174529-6174676) | |
| 421-532, gnl|hg17|chr10 (110598244-110598346) | |
| 421-532, gnl|hg17|chr12 (110769243-110769395) | |
| 421-532, gnl|Hg17|chr12 (110769274-110769385) | |
| 421-532, gnl|loxAfr1|scaffold_32846 (12393-12493) | |
| 421-532, gnl|loxAfr1|scaffold_36060 (13980-13830) | |
| 421-532, gnl|mm7|chr5 (120771253-120771089) | |
| 421-532, gnl|mm7|chr5 (120771205-120771101) | |
| 421-532, gnl|Mm7|chr5 (120771208-120771097) | |
| 421-532, gnl|monDom2|scaffold_203 (181839-181685) | |
| 421-532, gnl|oryCun1|scaffold_173336 (29727-29790) | |
| 421-532, gnl|panTro1|chr10 (113372819-113372969) | |
| 421-532, gnl|panTro1|chr8 (112495955-112496057) | |
| 421-532, gnl|rheMac2|chr11 (112803146-112803308) | |
| 421-532, gnl|rheMac2|chr9 (108559894-108559996) | |
| 421-532, gnl|rn3|chr12 (35999651-35999822) | |
| 421-532, gnl|rn3|chr12 (35999706-35999810) | |
| 421-532, gnl|tetNig1|chr12 (9254068-9253953) | |
| 421-532, gnl|tetNig1|chr12 (9254163-9253960) | |
| 421-532, gnl|xenTro1|scaffold_1020 (51920-51778) | |
| 798-988, gnl|bosTau2|chr17 (38763498-38763688) | |
| 798-988, gnl|Hg17|chr12 (110784103-110784293) | |
| 798-988, gnl|Mm7|chr5 (120765707-120765517) | |
| 1107-1239, gnl|bosTau2|chr17 (38769451-38769583) | |
| 1107-1239, gnl|Hg17|chr12 (110789010-110789142) | |
| 1107-1239, gnl|Mm7|chr5 (120761208-120761076) | |
| 1460-1896, gnl|bosTau2|chr17 (38773193-38773627) | |
| 1460-1896, gnl|Hg17|chr12 (110793490-110793932) | |
| 1460-1896, gnl|Mm7|chr5 (120759225-120758827) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-179, gnl|bosTau2|chr17 (38744274-38744446) | |
| 4-179, gnl|Hg17|chr12 (110743122-110743297) | |
| 4-179, gnl|Mm7|chr5 (120779306-120779146) | |
| 421-532, gnl|bosTau2|chr17 (38754659-38754770) | |
| 421-532, gnl|canFam2|chr26 (12415180-12415327) | |
| 421-532, gnl|canFam2|chr28 (23467696-23467776) | |
| 421-532, gnl|danRer3|chrUn (71109845-71109695) | |
| 421-532, gnl|danRer3|chrUn (71109831-71109710) | |
| 421-532, gnl|echTel1|scaffold_282325 (138067-137963) | |
| 421-532, gnl|echTel1|scaffold_318758 (201101-200951) | |
| 421-532, gnl|fr1|chrUn (46371235-46371085) | |
| 421-532, gnl|fr1|chrUn (46371309-46371117) | |
| 421-532, gnl|galGal2|chr15 (6174529-6174676) | |
| 421-532, gnl|hg17|chr10 (110598244-110598346) | |
| 421-532, gnl|hg17|chr12 (110769243-110769395) | |
| 421-532, gnl|Hg17|chr12 (110769274-110769385) | |
| 421-532, gnl|loxAfr1|scaffold_32846 (12393-12493) | |
| 421-532, gnl|loxAfr1|scaffold_36060 (13980-13830) | |
| 421-532, gnl|mm7|chr5 (120771253-120771089) | |
| 421-532, gnl|mm7|chr5 (120771205-120771101) | |
| 421-532, gnl|Mm7|chr5 (120771208-120771097) | |
| 421-532, gnl|monDom2|scaffold_203 (181839-181685) | |
| 421-532, gnl|oryCun1|scaffold_173336 (29727-29790) | |
| 421-532, gnl|panTro1|chr10 (113372819-113372969) | |
| 421-532, gnl|panTro1|chr8 (112495955-112496057) | |
| 421-532, gnl|rheMac2|chr11 (112803146-112803308) | |
| 421-532, gnl|rheMac2|chr9 (108559894-108559996) | |
| 421-532, gnl|rn3|chr12 (35999651-35999822) | |
| 421-532, gnl|rn3|chr12 (35999706-35999810) | |
| 421-532, gnl|tetNig1|chr12 (9254068-9253953) | |
| 421-532, gnl|tetNig1|chr12 (9254163-9253960) | |
| 421-532, gnl|xenTro1|scaffold_1020 (51920-51778) | |
| 798-988, gnl|bosTau2|chr17 (38763498-38763688) | |
| 798-988, gnl|Hg17|chr12 (110784103-110784293) | |
| 798-988, gnl|Mm7|chr5 (120765707-120765517) | |
| 1107-1239, gnl|bosTau2|chr17 (38769451-38769583) | |
| 1107-1239, gnl|Hg17|chr12 (110789010-110789142) | |
| 1107-1239, gnl|Mm7|chr5 (120761208-120761076) | |
| 1460-1896, gnl|bosTau2|chr17 (38773193-38773627) | |
| 1460-1896, gnl|Hg17|chr12 (110793490-110793932) | |
| 1460-1896, gnl|Mm7|chr5 (120759225-120758827) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| cbe (0.717703) | |
| spc (0.680195) | |
| fco (0.471624) | |
| lin (0.436808) | |
| thg (0.380373) | |
| gul (0.355177) | |
| nco (0.323468) | |
| isp (0.300752) | |
| cte (0.29274) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| ova (0.258264) | |
| ret (0.257467) | |
| aor (0.195274) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| rec (0.17307) | |
| eye (0.170503) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| ste (0.135208) | |
| sug (0.127291) | |
| tra (0.123092) | |
| cty (0.10408) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.717703) | |
| spc (0.680195) | |
| fco (0.471624) | |
| lin (0.436808) | |
| thg (0.380373) | |
| gul (0.355177) | |
| nco (0.323468) | |
| isp (0.300752) | |
| cte (0.29274) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| ova (0.258264) | |
| ret (0.257467) | |
| aor (0.195274) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| rec (0.17307) | |
| eye (0.170503) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| ste (0.135208) | |
| sug (0.127291) | |
| tra (0.123092) | |
| cty (0.10408) |