Non-Coding RNA Search

Ss1.1-unkn-MI-P-NA-aen-c-12-1-UM.s1.3

Sequence:


               
               TCATTTTGCTTGGCAGAAATCAGAATATAGAAAAGATCATATTTGGGTCACTGTATTTTT
TTTTTCTTTTCTTTTTGTATTTCAGGATATGTAGCAGGTGGGCCATGTCATGTTATTTTT
TAAATCAATCATTAAACTATTCGCAGTCCCATCTATTTGAAATCTGTAATAAATTATCAT
TTAGAAATTCTAGTCTGCAATAAATGGATGGCTCATTCTACTGTTATTCTTAAAACTAAG
CTTTGCTTGGAAGGAAAAGGCCTGGAGTTTCTTATAGAATCGTCAATTCTTCCAGAATCT
CTGAGTCTTCTAATTTGCAGTCCTTTTGTAATCTCTGCTCCGTTCCATCAGCGTCATTCT
TTCGTTATACAAAGCCCCAGGGATGAACTGCTACTTCTTTAAAGTGTAGTCATTATAATG
AGTGTGAAAAGAGTTTTGGCCTGTTCAAAAAATAGTGTTTTCAACTTCTTATGGTACAGA
CAGGTATGTGTTACATATATTAAAAGCCTGTTTGTTTTAACAGGAAATGAAAAAGGGATC
TTCTGTGTTATAGATTTAAAACTAATTTTTCCTGTGTATAAACTAATTGGTTTGATTTTA
AATATTCCTGGCTTTTATTAATATGTCTTAATTTTGAGTTTGAAAGTGCAATAAACATAC
TGGCACAGATTTCATTTTGTTGCAGTTGGCATACACTGGGGATGATCACTTAAAAAAAAA
GATTTTACACAATGCTTACATCTGGTAGATGTCTTATGAGATTGTTCTGCTTCTTCTAAG
TTATTTAGTTGGTGGGAGATGTAAAATGTAAATACTTGTTCCTTGTTCTGTATACATTTC
TCAAATGTACGCCTGTATTATAATACCCTCCCAATTCTAGGGGATATTTGTGCAATAAAT
TCACTTGTCAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCATTTTGCTTGGCAGAAATCAGAATATAGAAAAGATCATATTTGGGTCACTGTATTTTT
TTTTTCTTTTCTTTTTGTATTTCAGGATATGTAGCAGGTGGGCCATGTCATGTTATTTTT
TAAATCAATCATTAAACTATTCGCAGTCCCATCTATTTGAAATCTGTAATAAATTATCAT
TTAGAAATTCTAGTCTGCAATAAATGGATGGCTCATTCTACTGTTATTCTTAAAACTAAG
CTTTGCTTGGAAGGAAAAGGCCTGGAGTTTCTTATAGAATCGTCAATTCTTCCAGAATCT
CTGAGTCTTCTAATTTGCAGTCCTTTTGTAATCTCTGCTCCGTTCCATCAGCGTCATTCT
TTCGTTATACAAAGCCCCAGGGATGAACTGCTACTTCTTTAAAGTGTAGTCATTATAATG
AGTGTGAAAAGAGTTTTGGCCTGTTCAAAAAATAGTGTTTTCAACTTCTTATGGTACAGA
CAGGTATGTGTTACATATATTAAAAGCCTGTTTGTTTTAACAGGAAATGAAAAAGGGATC
TTCTGTGTTATAGATTTAAAACTAATTTTTCCTGTGTATAAACTAATTGGTTTGATTTTA
AATATTCCTGGCTTTTATTAATATGTCTTAATTTTGAGTTTGAAAGTGCAATAAACATAC
TGGCACAGATTTCATTTTGTTGCAGTTGGCATACACTGGGGATGATCACTTAAAAAAAAA
GATTTTACACAATGCTTACATCTGGTAGATGTCTTATGAGATTGTTCTGCTTCTTCTAAG
TTATTTAGTTGGTGGGAGATGTAAAATGTAAATACTTGTTCCTTGTTCTGTATACATTTC
TCAAATGTACGCCTGTATTATAATACCCTCCCAATTCTAGGGGATATTTGTGCAATAAAT
TCACTTGTCAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               441-558, - strand, RNAz p=0.70716

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               441-558, - strand, RNAz p=0.70716

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-252, gnl|bosTau2|chr7 (18888601-18888348)
               

               
               1-252, gnl|Hg17|chr5 (131006543-131005975)
               

               
               1-252, gnl|Mm7|chr11 (54474142-54474393)
               


               
               266-912, gnl|bosTau2|chr7 (18888361-18887712)
               

               
               266-912, gnl|Hg17|chr5 (131006015-131005310)
               

               
               266-912, gnl|Mm7|chr11 (54474359-54474989)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-252, gnl|bosTau2|chr7 (18888601-18888348)
               

               
               1-252, gnl|Hg17|chr5 (131006543-131005975)
               

               
               1-252, gnl|Mm7|chr11 (54474142-54474393)
               


               
               266-912, gnl|bosTau2|chr7 (18888361-18887712)
               

               
               266-912, gnl|Hg17|chr5 (131006015-131005310)
               

               
               266-912, gnl|Mm7|chr11 (54474359-54474989)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               vin (0.332557)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ret (0.128733)
               

               
               pgl (0.118483)
               

               
               eje (0.0988338)

	1-252, gnl\|bosTau2\|chr7 (18888601-18888348)
	1-252, gnl\|Hg17\|chr5 (131006543-131005975)
	1-252, gnl\|Mm7\|chr11 (54474142-54474393)

	266-912, gnl\|bosTau2\|chr7 (18888361-18887712)
	266-912, gnl\|Hg17\|chr5 (131006015-131005310)
	266-912, gnl\|Mm7\|chr11 (54474359-54474989)

	vin (0.332557)
	ece (0.229305)
	eye (0.170503)
	mga (0.160205)
	fco (0.157208)
	bfe (0.149858)
	lin (0.145603)
	ssp (0.13552)
	ste (0.135208)
	ret (0.128733)
	pgl (0.118483)
	eje (0.0988338)