Non-Coding RNA Search

Ss1.1-unkn-MI-P-NA-aen-g-10-1-UM.s1.3

Sequence:


               
               CTTTGGGGGAGGGAAATAAAATTGCAGAAAACTGCAGCATACTAAATCTTAAAGAAGGGC
TACATCTATATCCAGAAACCTGCTCTTTTGCACGGAATATTATTTAAATTCAGAGTTGTG
AGAGGGTTGGGGTGTGGTACACCCACTTTCAATTTCTCAATTGCATTGAATTCAAACTTA
GGGTTTGTTTTTTAGCCATTCACTTAGTTTCTAGTTACTTCCCATTTGTTCAGCTTAGTG
TAATTAGTTTTAATTCTTTTCATACTAAAATTTTATGGTGATTGGGGGAAGGGATTTAAG
CGTCACTAACCTGACAGTTGTTTCCAGGAATTTGCTATGTTCACTGCTAGTGTATTAGTA
ATCCTAGACTCAGAATCACAATAGTAATAAAATAACACCAGGGGTCATTTTTCCTAACTT
ACTCTATGTTCAGATGTGGAATTTCTGTCTTCCAAGAGGAAATGTGACTTCACTTTGGTG
CCAATGGACAGAAAATTCTACGTGTGCTACATAGGAGAAGTTTGGAATGCACTTAATAGC
TGGTTTTTCACCTTGGTTTCAAGGTGGAAAGAAATTGATCATGAATCTCTAATAAATTTC
GATCTCTTAAACCAGTAGGTGCTTAATAATTTTTGATTTGATTAATTCCCATTTGAATTT
TATGGGTTCTATTAAAGAAAATCAGGACCCCAATCCATTGTCATCTAATTAATTACCCTT
GAAGTTTTCCAAGGTATAATGTGGGATTTTATGCAAAATTCCAAGCTACCATGCCACTTT
TTTTTTAGCTGTAATGAGGAGGAATTTCTTCCCAACCTTGTTTACATGTTGTGCTTTTTT
GGTCCAGAAATGCCAAATCTTTTAAAAGATGGTACAACTTTTGAGTCCTGGCTTGACTAT
ACAACTTTGAGCTTTAATGGCATGAGTTTTGCCGTATTTATAGGAGAGTTATTCTCTGTA
TAACAGCTCAGAGTTGCAAGTATGACATGTGAATGATACAATAACTTTAAGAAATGTCTG
TGTTGTATATTAAGACTGTTTGCCATGAATCTGAAGTTTGAACTTATGTATTTCAATTTG
GTATGCTAAAAAAGTACTGAATTAATGTATCGATCTTTTTTTAAAAACGATATTGTAATC
TCAGTTCAGAATTTAACTGAAAATATAAAACCCAAATGATTTCTATATGGTAAATTGAAC
TGTGTAAAGGTAACTTGTGTGATTCTGAATACACAGATAAAATGTTTTTATTCCTCCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTGGGGGAGGGAAATAAAATTGCAGAAAACTGCAGCATACTAAATCTTAAAGAAGGGC
TACATCTATATCCAGAAACCTGCTCTTTTGCACGGAATATTATTTAAATTCAGAGTTGTG
AGAGGGTTGGGGTGTGGTACACCCACTTTCAATTTCTCAATTGCATTGAATTCAAACTTA
GGGTTTGTTTTTTAGCCATTCACTTAGTTTCTAGTTACTTCCCATTTGTTCAGCTTAGTG
TAATTAGTTTTAATTCTTTTCATACTAAAATTTTATGGTGATTGGGGGAAGGGATTTAAG
CGTCACTAACCTGACAGTTGTTTCCAGGAATTTGCTATGTTCACTGCTAGTGTATTAGTA
ATCCTAGACTCAGAATCACAATAGTAATAAAATAACACCAGGGGTCATTTTTCCTAACTT
ACTCTATGTTCAGATGTGGAATTTCTGTCTTCCAAGAGGAAATGTGACTTCACTTTGGTG
CCAATGGACAGAAAATTCTACGTGTGCTACATAGGAGAAGTTTGGAATGCACTTAATAGC
TGGTTTTTCACCTTGGTTTCAAGGTGGAAAGAAATTGATCATGAATCTCTAATAAATTTC
GATCTCTTAAACCAGTAGGTGCTTAATAATTTTTGATTTGATTAATTCCCATTTGAATTT
TATGGGTTCTATTAAAGAAAATCAGGACCCCAATCCATTGTCATCTAATTAATTACCCTT
GAAGTTTTCCAAGGTATAATGTGGGATTTTATGCAAAATTCCAAGCTACCATGCCACTTT
TTTTTTAGCTGTAATGAGGAGGAATTTCTTCCCAACCTTGTTTACATGTTGTGCTTTTTT
GGTCCAGAAATGCCAAATCTTTTAAAAGATGGTACAACTTTTGAGTCCTGGCTTGACTAT
ACAACTTTGAGCTTTAATGGCATGAGTTTTGCCGTATTTATAGGAGAGTTATTCTCTGTA
TAACAGCTCAGAGTTGCAAGTATGACATGTGAATGATACAATAACTTTAAGAAATGTCTG
TGTTGTATATTAAGACTGTTTGCCATGAATCTGAAGTTTGAACTTATGTATTTCAATTTG
GTATGCTAAAAAAGTACTGAATTAATGTATCGATCTTTTTTTAAAAACGATATTGTAATC
TCAGTTCAGAATTTAACTGAAAATATAAAACCCAAATGATTTCTATATGGTAAATTGAAC
TGTGTAAAGGTAACTTGTGTGATTCTGAATACACAGATAAAATGTTTTTATTCCTCCTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               272-776, + strand, RNAz p=0.990667

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               272-776, + strand, RNAz p=0.990667

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               445-557, + strand, RNAmicro p=0.999484

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               445-557, + strand, RNAmicro p=0.999484

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               272-774, CR453522 Normalized and Subtracted bovine embryonic and 
(emb|CR453522.2|), blast E-value=0, identity=90.73% 
               

               
               272-774, 718665 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB459178.1|), 
blast E-value=0, identity=90.55% 
               

               
               272-710, EST00459 brain and spinal cord cDNA library in Gecko Gekko 
(gb|CO871644.1|), blast E-value=0, identity=99.54% 
               

               
               272-773, HESC3_3_D09.g1_A036 NIH_MGC_260 Homo sapiens cDNA clone 
(gb|CX781172.1|), blast E-value=0, identity=90.02% 
               

               
               278-769, nad29a07.y1 Dog eye cornea. Unnormalized (nad) Canis familiaris 
(gb|DN873824.1|), blast E-value=0, identity=90.74% 
               

               
               272-774, Hw_Fat_73_050831_B10 Bos taurus CF-24-HW fat cDNA library Bos 
(gb|DV776329.1|), blast E-value=0, identity=90.73%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               272-774, CR453522 Normalized and Subtracted bovine embryonic and 
(emb|CR453522.2|), blast E-value=0, identity=90.73% 
               

               
               272-774, 718665 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB459178.1|), 
blast E-value=0, identity=90.55% 
               

               
               272-710, EST00459 brain and spinal cord cDNA library in Gecko Gekko 
(gb|CO871644.1|), blast E-value=0, identity=99.54% 
               

               
               272-773, HESC3_3_D09.g1_A036 NIH_MGC_260 Homo sapiens cDNA clone 
(gb|CX781172.1|), blast E-value=0, identity=90.02% 
               

               
               278-769, nad29a07.y1 Dog eye cornea. Unnormalized (nad) Canis familiaris 
(gb|DN873824.1|), blast E-value=0, identity=90.74% 
               

               
               272-774, Hw_Fat_73_050831_B10 Bos taurus CF-24-HW fat cDNA library Bos 
(gb|DV776329.1|), blast E-value=0, identity=90.73%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015878, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015878, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               20-1260, gnl|bosTau2|chr14 (37000682-36999449)
               

               
               20-1260, gnl|Hg17|chr8 (103909006-103907761)
               

               
               20-1260, gnl|Mm7|chr15 (38600153-38599000)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-1260, gnl|bosTau2|chr14 (37000682-36999449)
               

               
               20-1260, gnl|Hg17|chr8 (103909006-103907761)
               

               
               20-1260, gnl|Mm7|chr15 (38600153-38599000)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               tra (0.492368)
               

               
               fcc (0.39557)
               

               
               ova (0.387397)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.492368)
               

               
               fcc (0.39557)
               

               
               ova (0.387397)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               liv (0.292569)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	272-774, CR453522 Normalized and Subtracted bovine embryonic and (emb\|CR453522.2\|), blast E-value=0, identity=90.73%
	272-774, 718665 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CB459178.1\|), blast E-value=0, identity=90.55%
	272-710, EST00459 brain and spinal cord cDNA library in Gecko Gekko (gb\|CO871644.1\|), blast E-value=0, identity=99.54%
	272-773, HESC3_3_D09.g1_A036 NIH_MGC_260 Homo sapiens cDNA clone (gb\|CX781172.1\|), blast E-value=0, identity=90.02%
	278-769, nad29a07.y1 Dog eye cornea. Unnormalized (nad) Canis familiaris (gb\|DN873824.1\|), blast E-value=0, identity=90.74%
	272-774, Hw_Fat_73_050831_B10 Bos taurus CF-24-HW fat cDNA library Bos (gb\|DV776329.1\|), blast E-value=0, identity=90.73%

	20-1260, gnl\|bosTau2\|chr14 (37000682-36999449)
	20-1260, gnl\|Hg17\|chr8 (103909006-103907761)
	20-1260, gnl\|Mm7\|chr15 (38600153-38599000)

	tra (0.492368)
	fcc (0.39557)
	ova (0.387397)
	vin (0.332557)
	fco (0.314416)
	liv (0.292569)
	fce (0.271592)
	kid (0.259471)
	mgp (0.230681)
	ece (0.229305)
	ldo (0.194005)
	mgm (0.180343)
	fty (0.17584)
	sin (0.174948)
	eye (0.170503)
	fhi (0.169578)
	nje (0.16592)
	mga (0.160205)
	spl (0.143184)
	lyg (0.133103)
	thg (0.126791)
	ecc (0.115035)
	jca (0.11396)
	nbm (0.0993246)