Non-Coding RNA Search

Ss1.1-unkn-MI-P-NA-aeo-a-09-1-UM.s1.3

Sequence:


               
               AGAATTAAATATGGCCTGCAATAGCACACAGGGTGACACTTGCCTGGGCAAAGACAATCG
GCTTCTGGAACATAACAGATCAGATAACTGCAAAGAGGTTGTCATTACTGGTTACACGCA
AGCCGAGGCCAGATCTCTTACTTAAAGGCTTGGGGAAGGCACAAAACATGAGAGAAAGTG
TTGTACAGAATTTATCATGGATTTTTGACTGCTGAAAAAGGGACAATGGAATTTAGCCAT
ACCAAGGACTGTACTGGAAACAGACTTCTGCTGCTGAATGTGCCCTGTTGTGACCAGGTT
GCACTTGGAAGAAATCCCGAGTCTTCATGAGGCATTTGAAGCTTATCAAAACTGTGGCTA
GAACTCATTTGGTGCTCCCCATAGGAGTGGTCTGCTTACGGACTGGCCAGTGTCCATGAA
ACAACTGTAAATACCAACGTGTGTGCATGGGTCAACAGCTTTGGCCATCTCACCTCAAAG
GAAGCCAAATTCATGATCAACATCTCTGGAGCTTCAAGTAAGGCCCATACCTCTGTGAAT
TACCCCTCATGGACCCGCAGTAGATTGTGCTGTGACTATTACAAAGCAGTAATATTGGTG
TGGTATAGGTCTGTTTTAATTTCTCTTACTTCTCCTTTGTTGATTGAACCCATGAACATT
GTATCATTTTTTAAATAAACCAATTATATTTTCAGCTTGTCATATTATGTTGTGAAATTT
TCAGTGCCTATTTATTAAAACTGACCTATTTGTAAGTCCTACATTTAAGTTCTGAAAAAA
TGACTTAAAAACACTCACTAATATCATTCATAGTTTGTCTTTTGTCATTGTTACCTCAAT
TATAAATATTACAAAAAATAAAATTCTGGCAATGAGAGTATTTTTTTATTAAATGATCAA
GGAACAATGTCGTTGTATAGTAGAATATTAATTGAATTATATCCTAAAATGTATATTTTG
CATAAAAGAGATATTCTTCAATCACTTTTTTGTGAGTTTTGTGGTAAATGAAGCTTGTAA
TTGTCTTTAAAACTGTTGTAGTTGAAACTGTGTAAGAATTCTTCATCTTGCTTAATCAGT
ATTTCCAGAATCTATTAGTTCCCCTGGGATTCTGAATATAACCTATAATCTAATTATGAA
CCACTGTGTCGTGGACCTTTCATGAACATCTCAAGGTGCATGCACAACCTTGGTGATAGC
CAATGGAAATGTAACTAACTGAAATGAAGAATAAAAGGCAAATAAGCTGGGGATAAATGT
GAATCTTATCTGATTAAATTATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATTAAATATGGCCTGCAATAGCACACAGGGTGACACTTGCCTGGGCAAAGACAATCG
GCTTCTGGAACATAACAGATCAGATAACTGCAAAGAGGTTGTCATTACTGGTTACACGCA
AGCCGAGGCCAGATCTCTTACTTAAAGGCTTGGGGAAGGCACAAAACATGAGAGAAAGTG
TTGTACAGAATTTATCATGGATTTTTGACTGCTGAAAAAGGGACAATGGAATTTAGCCAT
ACCAAGGACTGTACTGGAAACAGACTTCTGCTGCTGAATGTGCCCTGTTGTGACCAGGTT
GCACTTGGAAGAAATCCCGAGTCTTCATGAGGCATTTGAAGCTTATCAAAACTGTGGCTA
GAACTCATTTGGTGCTCCCCATAGGAGTGGTCTGCTTACGGACTGGCCAGTGTCCATGAA
ACAACTGTAAATACCAACGTGTGTGCATGGGTCAACAGCTTTGGCCATCTCACCTCAAAG
GAAGCCAAATTCATGATCAACATCTCTGGAGCTTCAAGTAAGGCCCATACCTCTGTGAAT
TACCCCTCATGGACCCGCAGTAGATTGTGCTGTGACTATTACAAAGCAGTAATATTGGTG
TGGTATAGGTCTGTTTTAATTTCTCTTACTTCTCCTTTGTTGATTGAACCCATGAACATT
GTATCATTTTTTAAATAAACCAATTATATTTTCAGCTTGTCATATTATGTTGTGAAATTT
TCAGTGCCTATTTATTAAAACTGACCTATTTGTAAGTCCTACATTTAAGTTCTGAAAAAA
TGACTTAAAAACACTCACTAATATCATTCATAGTTTGTCTTTTGTCATTGTTACCTCAAT
TATAAATATTACAAAAAATAAAATTCTGGCAATGAGAGTATTTTTTTATTAAATGATCAA
GGAACAATGTCGTTGTATAGTAGAATATTAATTGAATTATATCCTAAAATGTATATTTTG
CATAAAAGAGATATTCTTCAATCACTTTTTTGTGAGTTTTGTGGTAAATGAAGCTTGTAA
TTGTCTTTAAAACTGTTGTAGTTGAAACTGTGTAAGAATTCTTCATCTTGCTTAATCAGT
ATTTCCAGAATCTATTAGTTCCCCTGGGATTCTGAATATAACCTATAATCTAATTATGAA
CCACTGTGTCGTGGACCTTTCATGAACATCTCAAGGTGCATGCACAACCTTGGTGATAGC
CAATGGAAATGTAACTAACTGAAATGAAGAATAAAAGGCAAATAAGCTGGGGATAAATGT
GAATCTTATCTGATTAAATTATTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               177-1284, gnl|bosTau2|chr5 (1360907-1362018)
               

               
               177-1284, gnl|Hg17|chr12 (73721255-73720132)
               

               
               177-1284, gnl|Mm7|chr10 (111971419-111972584)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               177-1284, gnl|bosTau2|chr5 (1360907-1362018)
               

               
               177-1284, gnl|Hg17|chr12 (73721255-73720132)
               

               
               177-1284, gnl|Mm7|chr10 (111971419-111972584)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fco (0.628832)
               

               
               cbr (0.127975)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               cbr (0.127975)
               

               
               ecc (0.115035)

	177-1284, gnl\|bosTau2\|chr5 (1360907-1362018)
	177-1284, gnl\|Hg17\|chr12 (73721255-73720132)
	177-1284, gnl\|Mm7\|chr10 (111971419-111972584)