Non-Coding RNA Search

Ss1.1-unkn-MI-P-NA-aeo-e-10-1-UM.s1.3

Sequence:


               
               AGGAGGGGGCTGGGACCCCTTTCCATCCCAACCTTGAGCCCCAGGATATCCAGCACCCAT
AGCCAATCTTGGGACACACCCTCCCCCCCATCTGGTTGGAAGAGAGTAAGCAGTTTCCAG
AGAGCCAGACAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGCGAGCGAGAGCTGCTGTT
GAAAAGAAACAGTTCAACAGCCCAAAGATTTCCCTGCCCTTGGAGTGCTGGTCAGAGGCT
CCAGGGCTGCGGTGGTCAGGAGCCAGTTTCTGCAGCCCCTCCTCCCCACAGCTCCCTAGT
GGGGAGGGGCAGCTGTCCATTTGTCCAAAGTATTAATGCAACTGAAGCTGTGATATTTCC
AACGATTGTAGGAGGAAAAATTAGGGGGAGAGAGGAAAACAAAACCAACCCCTAAAACCA
TTTTCTTATTGTACATAACGACCTCATTCTCCTGTATATGCGGAAGATATAACCTTATAT
TTGGTAAGTGTTTCTTGTGCTATTTTATCACGTGACCTGTTTATAAAAATATATATTAAA
AAAAGTTGTAAAAACAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAGGGGGCTGGGACCCCTTTCCATCCCAACCTTGAGCCCCAGGATATCCAGCACCCAT
AGCCAATCTTGGGACACACCCTCCCCCCCATCTGGTTGGAAGAGAGTAAGCAGTTTCCAG
AGAGCCAGACAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGCGAGCGAGAGCTGCTGTT
GAAAAGAAACAGTTCAACAGCCCAAAGATTTCCCTGCCCTTGGAGTGCTGGTCAGAGGCT
CCAGGGCTGCGGTGGTCAGGAGCCAGTTTCTGCAGCCCCTCCTCCCCACAGCTCCCTAGT
GGGGAGGGGCAGCTGTCCATTTGTCCAAAGTATTAATGCAACTGAAGCTGTGATATTTCC
AACGATTGTAGGAGGAAAAATTAGGGGGAGAGAGGAAAACAAAACCAACCCCTAAAACCA
TTTTCTTATTGTACATAACGACCTCATTCTCCTGTATATGCGGAAGATATAACCTTATAT
TTGGTAAGTGTTTCTTGTGCTATTTTATCACGTGACCTGTTTATAAAAATATATATTAAA
AAAAGTTGTAAAAACAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               151-370, - strand, RNAz p=0.997308

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-370, - strand, RNAz p=0.997308

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-556, gnl|bosTau2|chr25 (1206720-1207264)
               

               
               1-556, gnl|Hg17|chr16 (683060-682501)
               

               
               1-556, gnl|Mm7|chr17 (24003926-24004502)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-556, gnl|bosTau2|chr25 (1206720-1207264)
               

               
               1-556, gnl|Hg17|chr16 (683060-682501)
               

               
               1-556, gnl|Mm7|chr17 (24003926-24004502)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               ebs (0.354904)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.354904)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

	1-556, gnl\|bosTau2\|chr25 (1206720-1207264)
	1-556, gnl\|Hg17\|chr16 (683060-682501)
	1-556, gnl\|Mm7\|chr17 (24003926-24004502)

	ebs (0.354904)
	fce (0.271592)
	fcc (0.197785)
	fbs (0.175346)
	fhi (0.169578)
	fco (0.157208)
	hyp (0.142837)
	pgl (0.118483)
	ecc (0.115035)