Non-Coding RNA Search

Ss1.1-unkn-MI-P-NA-aes-d-07-1-UM.s1.3

Sequence:


               
               GAGAAATAGGAATTAGATTATTTTAGTCATGAAGCAGAGTAGTAATTTCTCTGTCAGGAG
CAAAGAAATAAATGAGTTATTTCTGAAACTTAAGGGTGTTGGAAAAACAAAGGATGTGAA
AATGTTGTAGGAGGCTTTCAATTTTGTAAGCAAATTTTGCTCTTCTTACTGGTCAGAGTT
ACGCTAAATTAGAGATTTGGGGGAGCTAATTTTTTCTAGCCTTCAGAAATGCAAGTTAAG
AATTTTGATACTAAGTAAAATTCAGTACAACATGCTGAAATGGCATTAAGTGAAAAACTG
CCTTTTGTCACAGCGCTATTGCCCTTAAAAATTGTGCCCAAAGAATGAAAGTGTGGAAGT
TTGGAACTTGGAATGATTTTATTGCAGTCTTCCATTACATGGAAAATATTAGCATATCTA
AGAGCAAGGTTACTTGAAGGATCAGCTAATCATCTCTGTTGGAAATGTTTGATTGGCCAA
GAGCAACTCATGTTAAATAAAAGTACTGCTTACCATCAACTGGGTAAAATGGTATTATTG
AAATAGTATGAATGTGGTCAGAGTATTGTAGTGGAGAGTGAAGTATTATGTGTGGGTTAA
AGATATATTTGTAGATGCAGTGTCCTGCCCAGTTTTGTCTGTCTCCTAAATTTCCCTCTG
TAGTGTTTATTATCTTACAGCCTTGAGGCTCAAGGAGTCAGGAAGTGAAGGGCAGATAGT
AAAATTCTACTACCTCTTCTTAACCCCTTTCTTAAAACATTGTCTGACTTTCTATGTCTC
TCTGACATAGTAAACCCAAAGGATTGTGTTACTCCTCTGTGAAAATTACACACTTTTCCT
TTAAAAATGGTTTTACAGGAGTTCTTCCGTGGCTCAGCAGGTTAAAGGACCCAGCTTTGT
CACTGCTGGGGCACAGGTTCAGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAATAGGAATTAGATTATTTTAGTCATGAAGCAGAGTAGTAATTTCTCTGTCAGGAG
CAAAGAAATAAATGAGTTATTTCTGAAACTTAAGGGTGTTGGAAAAACAAAGGATGTGAA
AATGTTGTAGGAGGCTTTCAATTTTGTAAGCAAATTTTGCTCTTCTTACTGGTCAGAGTT
ACGCTAAATTAGAGATTTGGGGGAGCTAATTTTTTCTAGCCTTCAGAAATGCAAGTTAAG
AATTTTGATACTAAGTAAAATTCAGTACAACATGCTGAAATGGCATTAAGTGAAAAACTG
CCTTTTGTCACAGCGCTATTGCCCTTAAAAATTGTGCCCAAAGAATGAAAGTGTGGAAGT
TTGGAACTTGGAATGATTTTATTGCAGTCTTCCATTACATGGAAAATATTAGCATATCTA
AGAGCAAGGTTACTTGAAGGATCAGCTAATCATCTCTGTTGGAAATGTTTGATTGGCCAA
GAGCAACTCATGTTAAATAAAAGTACTGCTTACCATCAACTGGGTAAAATGGTATTATTG
AAATAGTATGAATGTGGTCAGAGTATTGTAGTGGAGAGTGAAGTATTATGTGTGGGTTAA
AGATATATTTGTAGATGCAGTGTCCTGCCCAGTTTTGTCTGTCTCCTAAATTTCCCTCTG
TAGTGTTTATTATCTTACAGCCTTGAGGCTCAAGGAGTCAGGAAGTGAAGGGCAGATAGT
AAAATTCTACTACCTCTTCTTAACCCCTTTCTTAAAACATTGTCTGACTTTCTATGTCTC
TCTGACATAGTAAACCCAAAGGATTGTGTTACTCCTCTGTGAAAATTACACACTTTTCCT
TTAAAAATGGTTTTACAGGAGTTCTTCCGTGGCTCAGCAGGTTAAAGGACCCAGCTTTGT
CACTGCTGGGGCACAGGTTCAGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               698-858, - strand, RNAz p=0.999521

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               698-858, - strand, RNAz p=0.999521

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               714-854, ILLUMIGEN_MCQ_25356 Katze_MMBR Macaca mulatta cDNA clone 
(gb|CN646027.1|), blast E-value=1e-32, identity=89.36% 
               

               
               714-854, ILLUMIGEN_MCQ_36082 Katze_MMBR Macaca mulatta cDNA clone 
(gb|CN805158.1|), blast E-value=1e-32, identity=89.36% 
               

               
               714-854, ILLUMIGEN_MCQ_42843 Katze_MMPB2 Macaca mulatta cDNA clone 
(gb|CO649215.1|), blast E-value=1e-32, identity=89.36% 
               

               
               713-846, LB00421.CR_F16 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT833503.1|), 
blast E-value=1e-39, identity=91.97% 
               

               
               779-846, 1464670 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT887945.1|), 
blast E-value=1e-26, identity=98.53% 
               

               
               713-846, 000708BTSA002781HT BTSA Bos taurus cDNA, mRNA sequence 
(gb|DY207949.1|), blast E-value=1e-39, identity=91.97%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               714-854, ILLUMIGEN_MCQ_25356 Katze_MMBR Macaca mulatta cDNA clone 
(gb|CN646027.1|), blast E-value=1e-32, identity=89.36% 
               

               
               714-854, ILLUMIGEN_MCQ_36082 Katze_MMBR Macaca mulatta cDNA clone 
(gb|CN805158.1|), blast E-value=1e-32, identity=89.36% 
               

               
               714-854, ILLUMIGEN_MCQ_42843 Katze_MMPB2 Macaca mulatta cDNA clone 
(gb|CO649215.1|), blast E-value=1e-32, identity=89.36% 
               

               
               713-846, LB00421.CR_F16 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb|DT833503.1|), 
blast E-value=1e-39, identity=91.97% 
               

               
               779-846, 1464670 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DT887945.1|), 
blast E-value=1e-26, identity=98.53% 
               

               
               713-846, 000708BTSA002781HT BTSA Bos taurus cDNA, mRNA sequence 
(gb|DY207949.1|), blast E-value=1e-39, identity=91.97%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-858, gnl|bosTau2|chr1 (6616057-6616912)
               

               
               1-858, gnl|Hg17|chr21 (29223885-29223035)
               

               
               1-858, gnl|Mm7|chr16 (87420154-87419226)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-858, gnl|bosTau2|chr1 (6616057-6616912)
               

               
               1-858, gnl|Hg17|chr21 (29223885-29223035)
               

               
               1-858, gnl|Mm7|chr16 (87420154-87419226)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               vin (0.332557)
               

               
               col (0.195008)
               

               
               fco (0.157208)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               col (0.195008)
               

               
               fco (0.157208)

	714-854, ILLUMIGEN_MCQ_25356 Katze_MMBR Macaca mulatta cDNA clone (gb\|CN646027.1\|), blast E-value=1e-32, identity=89.36%
	714-854, ILLUMIGEN_MCQ_36082 Katze_MMBR Macaca mulatta cDNA clone (gb\|CN805158.1\|), blast E-value=1e-32, identity=89.36%
	714-854, ILLUMIGEN_MCQ_42843 Katze_MMPB2 Macaca mulatta cDNA clone (gb\|CO649215.1\|), blast E-value=1e-32, identity=89.36%
	713-846, LB00421.CR_F16 GC_BGC-04 Bos taurus cDNA clone IMAGE (gb\|DT833503.1\|), blast E-value=1e-39, identity=91.97%
	779-846, 1464670 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DT887945.1\|), blast E-value=1e-26, identity=98.53%
	713-846, 000708BTSA002781HT BTSA Bos taurus cDNA, mRNA sequence (gb\|DY207949.1\|), blast E-value=1e-39, identity=91.97%

	1-858, gnl\|bosTau2\|chr1 (6616057-6616912)
	1-858, gnl\|Hg17\|chr21 (29223885-29223035)
	1-858, gnl\|Mm7\|chr16 (87420154-87419226)