Ss1.1-unkn-MI-P-NA-afq-f-12-1-UM.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGCCTATGGCAGTCTGGTGCTTTGCTCCTTGTGTTTGCGAAACAGATATCTGGTGATT TCAGAAAAACTCGAGGAGATTAAATCTTTCCGGGAGCTGACCTGCCTGGATCTTTCCTGT TGCAAGCTTGGAGATGAGCATGAACTTCTAGAACATCTCACCAATGAGGCCCTGTCTAGT GTAACTCAGCTCCACCTGAAGGATAACTGTTTATCTGATGCCGGGGTGAGGAAGATGACA GCACCAGTTCGAGTGATGAAAAGAGGCCTTGAAAATCTAACATTATTAGACTTATCTTGT AACCCTGAGATCACAGATGCAGGAATCGGATACCTCTTTTCTTTTAGAAAACTAAACTGC TTAGATATCTCTGGGACAGGACTCAAGGACATCAAAGCTGTCAAACATAAGCTTCAGACC CACATTGGCCTCATTCACTCCAAAGTGCCTTTGAAGGAATTTGATCACAGTAACTGCAAG ACCGAAGGCTGGGCTGACCAGATTGTTCTGCAGTGGGATCGTGTGACTTCGGAAGCCGTG AAGCCACGAGAAACCTCGGAGCCTCGAACAGCAGCTCAGCACTTCTATGGGAAGCGGGCT CCAGCAGAAGCCCCAGTGAAGTGTCCCCTGGCAGACACCCACGTGAACTCTTCCGAGAAG CTCCAGTTCTATAAGGAGAAAGCCCCAGACTGCTGTGGGCCATTGTTGAAATGTGAAGCT GTCTCAAGCCAGGAGTCAAAGAAGAGCAAGAAGAGAGCTTTCGAGGAGACTGAGAAGGAA CAAAACAGCTCCTCGCAGCCTTCGAAGCAGAAATATGTGTGTCTTGCTGTGGAGGACTGG GACTTGCTAAATTCCTACTGATTGGCAGAGGGAAGTTGACCTTCCCCCTCCCACTCAAGT GTCTGAGGCGAGGGGCTGATGACGTTTTCCTTTTCGTTTGAGTTGACCTATGGCGTTAGC ATAGCGAGTGGATATTTCTACTTTTGTGGTGGGGGAGGGAATGCTCTGGAAGTATGTAAT AATTTCTAATGTATATTTTCAATACATAGTAATTTTTTCAAATAAACGTTTTTGCTGTCA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGCCTATGGCAGTCTGGTGCTTTGCTCCTTGTGTTTGCGAAACAGATATCTGGTGATT TCAGAAAAACTCGAGGAGATTAAATCTTTCCGGGAGCTGACCTGCCTGGATCTTTCCTGT TGCAAGCTTGGAGATGAGCATGAACTTCTAGAACATCTCACCAATGAGGCCCTGTCTAGT GTAACTCAGCTCCACCTGAAGGATAACTGTTTATCTGATGCCGGGGTGAGGAAGATGACA GCACCAGTTCGAGTGATGAAAAGAGGCCTTGAAAATCTAACATTATTAGACTTATCTTGT AACCCTGAGATCACAGATGCAGGAATCGGATACCTCTTTTCTTTTAGAAAACTAAACTGC TTAGATATCTCTGGGACAGGACTCAAGGACATCAAAGCTGTCAAACATAAGCTTCAGACC CACATTGGCCTCATTCACTCCAAAGTGCCTTTGAAGGAATTTGATCACAGTAACTGCAAG ACCGAAGGCTGGGCTGACCAGATTGTTCTGCAGTGGGATCGTGTGACTTCGGAAGCCGTG AAGCCACGAGAAACCTCGGAGCCTCGAACAGCAGCTCAGCACTTCTATGGGAAGCGGGCT CCAGCAGAAGCCCCAGTGAAGTGTCCCCTGGCAGACACCCACGTGAACTCTTCCGAGAAG CTCCAGTTCTATAAGGAGAAAGCCCCAGACTGCTGTGGGCCATTGTTGAAATGTGAAGCT GTCTCAAGCCAGGAGTCAAAGAAGAGCAAGAAGAGAGCTTTCGAGGAGACTGAGAAGGAA CAAAACAGCTCCTCGCAGCCTTCGAAGCAGAAATATGTGTGTCTTGCTGTGGAGGACTGG GACTTGCTAAATTCCTACTGATTGGCAGAGGGAAGTTGACCTTCCCCCTCCCACTCAAGT GTCTGAGGCGAGGGGCTGATGACGTTTTCCTTTTCGTTTGAGTTGACCTATGGCGTTAGC ATAGCGAGTGGATATTTCTACTTTTGTGGTGGGGGAGGGAATGCTCTGGAAGTATGTAAT AATTTCTAATGTATATTTTCAATACATAGTAATTTTTTCAAATAAACGTTTTTGCTGTCA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 44-179, gnl|bosTau2|chr3 (61938642-61938777) | |
| 44-179, gnl|canFam2|chr5 (58032627-58032515) | |
| 44-179, gnl|danRer3|chr2 (18065150-18065241) | |
| 44-179, gnl|dasNov1|scaffold_161314 (784-896) | |
| 44-179, gnl|echTel1|scaffold_204285 (2153-2039) | |
| 44-179, gnl|galGal2|chr8 (25362204-25362317) | |
| 44-179, gnl|hg17|chr1 (54135821-54135933) | |
| 44-179, gnl|Hg17|chr1 (54135839-54135974) | |
| 44-179, gnl|loxAfr1|scaffold_167545 (3476-3599) | |
| 44-179, gnl|mm7|chr4 (106619802-106619690) | |
| 44-179, gnl|Mm7|chr4 (106619782-106619647) | |
| 44-179, gnl|oryCun1|scaffold_138805 (12575-12687) | |
| 44-179, gnl|panTro1|chr1 (52387456-52387568) | |
| 44-179, gnl|rheMac2|chr1 (56831793-56831905) | |
| 44-179, gnl|rn3|chr5 (128335808-128335696) | |
| 44-179, gnl|tetNig1|chr15_random (2272284-2272357) | |
| 44-179, gnl|xenTro1|scaffold_197 (946830-946923) | |
| 386-501, gnl|bosTau2|chr3 (61942226-61942341) | |
| 386-501, gnl|Hg17|chr1 (54139988-54140103) | |
| 386-501, gnl|Mm7|chr4 (106615632-106615517) | |
| 587-1078, gnl|bosTau2|chr3 (61946103-61946598) | |
| 587-1078, gnl|Hg17|chr1 (54145359-54145856) | |
| 587-1078, gnl|Mm7|chr4 (106610423-106609960) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-179, gnl|bosTau2|chr3 (61938642-61938777) | |
| 44-179, gnl|canFam2|chr5 (58032627-58032515) | |
| 44-179, gnl|danRer3|chr2 (18065150-18065241) | |
| 44-179, gnl|dasNov1|scaffold_161314 (784-896) | |
| 44-179, gnl|echTel1|scaffold_204285 (2153-2039) | |
| 44-179, gnl|galGal2|chr8 (25362204-25362317) | |
| 44-179, gnl|hg17|chr1 (54135821-54135933) | |
| 44-179, gnl|Hg17|chr1 (54135839-54135974) | |
| 44-179, gnl|loxAfr1|scaffold_167545 (3476-3599) | |
| 44-179, gnl|mm7|chr4 (106619802-106619690) | |
| 44-179, gnl|Mm7|chr4 (106619782-106619647) | |
| 44-179, gnl|oryCun1|scaffold_138805 (12575-12687) | |
| 44-179, gnl|panTro1|chr1 (52387456-52387568) | |
| 44-179, gnl|rheMac2|chr1 (56831793-56831905) | |
| 44-179, gnl|rn3|chr5 (128335808-128335696) | |
| 44-179, gnl|tetNig1|chr15_random (2272284-2272357) | |
| 44-179, gnl|xenTro1|scaffold_197 (946830-946923) | |
| 386-501, gnl|bosTau2|chr3 (61942226-61942341) | |
| 386-501, gnl|Hg17|chr1 (54139988-54140103) | |
| 386-501, gnl|Mm7|chr4 (106615632-106615517) | |
| 587-1078, gnl|bosTau2|chr3 (61946103-61946598) | |
| 587-1078, gnl|Hg17|chr1 (54145359-54145856) | |
| 587-1078, gnl|Mm7|chr4 (106610423-106609960) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| eye (0.341006) | |
| ldo (0.291008) | |
| spl (0.286369) | |
| che (0.272628) | |
| ssp (0.271039) | |
| bla (0.248694) | |
| col (0.195008) | |
| fty (0.17584) | |
| nje (0.16592) | |
| csk (0.140746) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| thg (0.126791) | |
| clu (0.119646) | |
| pgl (0.118483) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.341006) | |
| ldo (0.291008) | |
| spl (0.286369) | |
| che (0.272628) | |
| ssp (0.271039) | |
| bla (0.248694) | |
| col (0.195008) | |
| fty (0.17584) | |
| nje (0.16592) | |
| csk (0.140746) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| thg (0.126791) | |
| clu (0.119646) | |
| pgl (0.118483) |