Non-Coding RNA Search

Ss1.1-unkn-MI-P-NA-afr-e-04-1-UM.s1.3

Sequence:


               
               CTCCGGACTTTCAGATGGGAGGTGCTTCTGATGCATCTACAGCAAAATCCCCTTTTAGTG
CAGTAGGAGAAAGCAGTCTCCCTTCCCCATCACCTACTGTATCAGTTAATCCTTTAACCA
GAAGTCCCCCTGAAACTTCTTCACAGATGACTCCTAATCCGTTACTCTTAAGTCCTACCA
CAGAACTAATGAAAGAAATTTCTGAATCTGTTGGAAAGAACCAATTTACTTCTGAAAGTA
CCCACTTGAACATTGGTCATAGGTCTGTGGGTCATAGCATGAGTATTGAATGTAAAGGGA
TTGATAAAGAGCTGAATGATTCCAAAAGTACACATATAGATATTCCAAGAATAAGCTCTT
CCCTGGGAAAAAAGCCAAGTTTGACTTCTGAATCCAGTATTCATACAATTACCCCTTCAG
GTTGTTAACTTTACTAGTTTATTTAGTAACAAGCCCTTCCTAAAACTTGGTGCAGTAACC
GCACCTGACAAACACTGCCAAGTTGCTGAAAGCCTAAGCACTACTTTGCAGTCCAAACCA
TTAAAAAAAAGAAAAGGAAGAAAACCTCGGTGGACTAAAATGGTGGCAAGAAGCACATGC
CGGTCTCCAAAAGGGCTAGAATTGGAAAGATCAGAGCTTTTTAAAAATGTTTCATGTAGT
TCACTATCAAATAGTAATTCTGAGCCAGCCAAGTTTATGAAGAACATTGGACCATCTTCA
TTTGTAGATCATGACTTCCTTAAACGCAGATTGCCAAAGTTGAGCAAATCGACAACTCCA
TCTCTTGCTCTCTTAACTGATAGTGAAAAACCATCTCATAAATCTTTTGCTACTCACAAA
CTGCCCTCCAGTATGTGTGTCTCTAGTGACCTTTTGTCTGATATTTATAAGCCCAAAAGA
GGAAGACCTAAATCTAAGGAGATGCCTCAACTGGAAGGTCCACCTAAAAGGACTCTAAAA
ATTCCTGCCTCTAAAGTTTTTTCTTTGCAGTCTAAGGAAGAACAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCGGACTTTCAGATGGGAGGTGCTTCTGATGCATCTACAGCAAAATCCCCTTTTAGTG
CAGTAGGAGAAAGCAGTCTCCCTTCCCCATCACCTACTGTATCAGTTAATCCTTTAACCA
GAAGTCCCCCTGAAACTTCTTCACAGATGACTCCTAATCCGTTACTCTTAAGTCCTACCA
CAGAACTAATGAAAGAAATTTCTGAATCTGTTGGAAAGAACCAATTTACTTCTGAAAGTA
CCCACTTGAACATTGGTCATAGGTCTGTGGGTCATAGCATGAGTATTGAATGTAAAGGGA
TTGATAAAGAGCTGAATGATTCCAAAAGTACACATATAGATATTCCAAGAATAAGCTCTT
CCCTGGGAAAAAAGCCAAGTTTGACTTCTGAATCCAGTATTCATACAATTACCCCTTCAG
GTTGTTAACTTTACTAGTTTATTTAGTAACAAGCCCTTCCTAAAACTTGGTGCAGTAACC
GCACCTGACAAACACTGCCAAGTTGCTGAAAGCCTAAGCACTACTTTGCAGTCCAAACCA
TTAAAAAAAAGAAAAGGAAGAAAACCTCGGTGGACTAAAATGGTGGCAAGAAGCACATGC
CGGTCTCCAAAAGGGCTAGAATTGGAAAGATCAGAGCTTTTTAAAAATGTTTCATGTAGT
TCACTATCAAATAGTAATTCTGAGCCAGCCAAGTTTATGAAGAACATTGGACCATCTTCA
TTTGTAGATCATGACTTCCTTAAACGCAGATTGCCAAAGTTGAGCAAATCGACAACTCCA
TCTCTTGCTCTCTTAACTGATAGTGAAAAACCATCTCATAAATCTTTTGCTACTCACAAA
CTGCCCTCCAGTATGTGTGTCTCTAGTGACCTTTTGTCTGATATTTATAAGCCCAAAAGA
GGAAGACCTAAATCTAAGGAGATGCCTCAACTGGAAGGTCCACCTAAAAGGACTCTAAAA
ATTCCTGCCTCTAAAGTTTTTTCTTTGCAGTCTAAGGAAGAACAAGAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               1-159, - strand, RNAz p=0.851051
               

               
               400-559, - strand, RNAz p=0.935353
               

               
               880-1008, - strand, RNAz p=0.958431

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.851051
               

               
               400-559, - strand, RNAz p=0.935353
               

               
               880-1008, - strand, RNAz p=0.958431

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               864-969, - strand, RNAmicro p=0.998402

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               864-969, - strand, RNAmicro p=0.998402

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1008, gnl|bosTau2|chr3 (13547560-13546554)
               

               
               1-1008, gnl|Hg17|chr1 (152264148-152263142)
               

               
               1-1008, gnl|Mm7|chr3 (89096199-89097202)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1008, gnl|bosTau2|chr3 (13547560-13546554)
               

               
               1-1008, gnl|Hg17|chr1 (152264148-152263142)
               

               
               1-1008, gnl|Mm7|chr3 (89096199-89097202)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               tbr (0.308356)
               

               
               isp (0.150376)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               isp (0.150376)

	1-159, - strand, RNAz p=0.851051
	400-559, - strand, RNAz p=0.935353
	880-1008, - strand, RNAz p=0.958431

	1-1008, gnl\|bosTau2\|chr3 (13547560-13546554)
	1-1008, gnl\|Hg17\|chr1 (152264148-152263142)
	1-1008, gnl\|Mm7\|chr3 (89096199-89097202)