Ss1.1-unkn-MI-P-O2-adw-b-07-1-UM.s1.3
|
GAAATTAAAGAAGTGGTGAGCCACAAGTACAAGACACCAATGGCCCATGAGATCTGCTAC
TCTGTGCTGTGTCTCTTCTCGTATGTGGCTGCCGTGCGTAGCAGTGAGGAAGACCTCAGA
ACCCCACCCCGACCTGTCTCCAGCTGATGGCAAGTGGTTAAGGCTGCCACAGCCCAGGGG
CTGCGCCTTGCCTCTCACTGTTGCCAAGTGCACGGAGCTGCCGTGACTGAGGAGTGGGTG
ATGCATGTGTGTCCTCTGAAAGCCCCTGCTGCAGCTTAGATGGGTCCCTGTTGTGCGTCC
TGGTGTGTCTCTCACAGGGCAGAGCGAGTCTCTTTCACTTTCTCCCTCTCCACCCCCGGA
ACACCTGCCTCCTGTTCCCTCAGAGCTCAGAAGTATGTGTGTGTTTGTGTATGTGTCTGT
TGGGCCAGTGGCTTCTAAGAACTCTTGAGAGTACAGGCTAGTGTGAGCCCGCCAGTACGT
GTCCCTGAGACATTTGTGTTGTCTCCTCGTCCTTGGCATTGTAACCCTCCAGGGTTAATG
AGAGCTCAGGCTCTCAGTCCTCTGTGATCTGGCACCACTGGGTGCCTGGAGTCACCCTGG
GGAGTAGGGAAGCTCAAGGCCTGTCCCTTTAGACATAGGGGCAAGTGGGGAAAGGAAGGG
GAGAGTCAAGGGGCAGCAGAGCGAGTGGCAACCTCCCTGCTTCCTTAGGTGTTGCTCAAG
CTGGCAGCTACTGCCCATGGGCACAAGCCTGGCCACTGCTACCACAGCCTCCACCACTGC
AGTGGGGCCGTGCTGACTGGCCGTTTGCAGAGCAGCAGGTTCCCTGTGGTCTGCCTGGCC
TTCGGCAGAAGGAACAGAATGGCTGGGGCTAGGAGAGTCCCGGGGCCCCCCAGCTCCTAT
GCCCAGTAACCTGGTGGGGTGGGTAAAGGCCAAGCTCAGGAGCCATATCTTTGTCTGCAG
GCAGTGTCTCAGGACTGGATGCCAGGAGGGAGAGCCTGGGAGTGGGCAAGAGATTATTGT
AAATATTTCAGCTCCGTATTATTTATAGAAAATGTACAGATGTGTGAATGTGAAATAAAT
GTCCTTAACTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAAATTAAAGAAGTGGTGAGCCACAAGTACAAGACACCAATGGCCCATGAGATCTGCTAC
TCTGTGCTGTGTCTCTTCTCGTATGTGGCTGCCGTGCGTAGCAGTGAGGAAGACCTCAGA
ACCCCACCCCGACCTGTCTCCAGCTGATGGCAAGTGGTTAAGGCTGCCACAGCCCAGGGG
CTGCGCCTTGCCTCTCACTGTTGCCAAGTGCACGGAGCTGCCGTGACTGAGGAGTGGGTG
ATGCATGTGTGTCCTCTGAAAGCCCCTGCTGCAGCTTAGATGGGTCCCTGTTGTGCGTCC
TGGTGTGTCTCTCACAGGGCAGAGCGAGTCTCTTTCACTTTCTCCCTCTCCACCCCCGGA
ACACCTGCCTCCTGTTCCCTCAGAGCTCAGAAGTATGTGTGTGTTTGTGTATGTGTCTGT
TGGGCCAGTGGCTTCTAAGAACTCTTGAGAGTACAGGCTAGTGTGAGCCCGCCAGTACGT
GTCCCTGAGACATTTGTGTTGTCTCCTCGTCCTTGGCATTGTAACCCTCCAGGGTTAATG
AGAGCTCAGGCTCTCAGTCCTCTGTGATCTGGCACCACTGGGTGCCTGGAGTCACCCTGG
GGAGTAGGGAAGCTCAAGGCCTGTCCCTTTAGACATAGGGGCAAGTGGGGAAAGGAAGGG
GAGAGTCAAGGGGCAGCAGAGCGAGTGGCAACCTCCCTGCTTCCTTAGGTGTTGCTCAAG
CTGGCAGCTACTGCCCATGGGCACAAGCCTGGCCACTGCTACCACAGCCTCCACCACTGC
AGTGGGGCCGTGCTGACTGGCCGTTTGCAGAGCAGCAGGTTCCCTGTGGTCTGCCTGGCC
TTCGGCAGAAGGAACAGAATGGCTGGGGCTAGGAGAGTCCCGGGGCCCCCCAGCTCCTAT
GCCCAGTAACCTGGTGGGGTGGGTAAAGGCCAAGCTCAGGAGCCATATCTTTGTCTGCAG
GCAGTGTCTCAGGACTGGATGCCAGGAGGGAGAGCCTGGGAGTGGGCAAGAGATTATTGT
AAATATTTCAGCTCCGTATTATTTATAGAAAATGTACAGATGTGTGAATGTGAAATAAAT
GTCCTTAACTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
814-900, + strand, RNAmicro p=0.999955 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
814-900, + strand, RNAmicro p=0.999955 |
Human gene identifier and UTR site,
human gene reading direction
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42-168, gnl|bosTau2|chr15 (48995633-48995507) |
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42-168, gnl|canFam2|chr18 (45325499-45325401) |
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42-168, gnl|danRer3|chr7 (23300331-23300236) |
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42-168, gnl|dasNov1|scaffold_3175 (67814-67911) |
|
42-168, gnl|echTel1|scaffold_323362 (46630-46533) |
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42-168, gnl|galGal2|chr5 (20340520-20340432) |
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42-168, gnl|hg17|chr11 (47307159-47307254) |
|
42-168, gnl|Hg17|chr11 (47307172-47307324) |
|
42-168, gnl|loxAfr1|scaffold_40430 (15557-15655) |
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42-168, gnl|mm7|chr2 (90989135-90989038) |
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42-168, gnl|Mm7|chr2 (90989118-90988968) |
|
42-168, gnl|monDom2|scaffold_33 (13180729-13180826) |
|
42-168, gnl|oryCun1|scaffold_158046 (12161-12065) |
|
42-168, gnl|panTro1|chr9 (47824034-47824129) |
|
42-168, gnl|rheMac2|chr14 (24792672-24792575) |
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42-168, gnl|rn3|chr3 (75395072-75394975) |
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42-168, gnl|tetNig1|chr5 (11182430-11182525) |
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42-168, gnl|xenTro1|scaffold_922 (181509-181416) |
| |
|
688-1086, gnl|bosTau2|chr3 (39577696-39578080) |
|
688-1086, gnl|Hg17|chr11 (47307771-47308150) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
42-168, gnl|bosTau2|chr15 (48995633-48995507) |
|
42-168, gnl|canFam2|chr18 (45325499-45325401) |
|
42-168, gnl|danRer3|chr7 (23300331-23300236) |
|
42-168, gnl|dasNov1|scaffold_3175 (67814-67911) |
|
42-168, gnl|echTel1|scaffold_323362 (46630-46533) |
|
42-168, gnl|galGal2|chr5 (20340520-20340432) |
|
42-168, gnl|hg17|chr11 (47307159-47307254) |
|
42-168, gnl|Hg17|chr11 (47307172-47307324) |
|
42-168, gnl|loxAfr1|scaffold_40430 (15557-15655) |
|
42-168, gnl|mm7|chr2 (90989135-90989038) |
|
42-168, gnl|Mm7|chr2 (90989118-90988968) |
|
42-168, gnl|monDom2|scaffold_33 (13180729-13180826) |
|
42-168, gnl|oryCun1|scaffold_158046 (12161-12065) |
|
42-168, gnl|panTro1|chr9 (47824034-47824129) |
|
42-168, gnl|rheMac2|chr14 (24792672-24792575) |
|
42-168, gnl|rn3|chr3 (75395072-75394975) |
|
42-168, gnl|tetNig1|chr5 (11182430-11182525) |
|
42-168, gnl|xenTro1|scaffold_922 (181509-181416) |
| |
|
688-1086, gnl|bosTau2|chr3 (39577696-39578080) |
|
688-1086, gnl|Hg17|chr11 (47307771-47308150) |
|
fce (0.543183) |
|
cov (0.396458) |
|
fbs (0.175346) |
|
pla (0.133672) |
|
fce (0.543183) |
|
cov (0.396458) |
|
fbs (0.175346) |
|
pla (0.133672) |
