Non-Coding RNA Search

Ss1.1-unkn-N15.T3.5

Sequence:


               
               CCAAAGATGCGGGTCAGGGCCCTCAAGCCATCCTCATTCTGCTGTCGGGGGCCCTGGCCC
TGACCGGGACCCAGGCGGGTCCCCACTCCCTGAGCTATTTCTACACCGCCGTGTCCCGGC
CCGACCGCGGGGACTCCCGCTTCCTCACCGTCGGGTACGTGGACGACACGCAGTTCGTGC
GGTTCGACAACTACGCCCCGAATCCGCGGATGGAGCCTCGGGCGCCGTGGATACAGCAGG
AGGGGCAGGAGTATTGGGATGAGGAGACGCGGAAAGTCAAGGAAACCGCACAGACTTACC
GAGTGGGCCTGAACACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGGTCTCACACCA
TCCAGAGCATGTACGGCTGCGACGTGGGACCAGACGGGCTCTTCCTCCACGGGTACCATC
AGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCG
CGGCGGACATGGCGGCTCAGATCTCCAAGCGCAAGAGGGAGGCGGCCAATGTGGCGGAGC
ACTGGAGGAGCTACCTGCAGGGCCTGTGTGTGGAGGGGCTCCGCAGATACCTGCAGATGG
GGAAGGACACGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAAGATGCGGGTCAGGGCCCTCAAGCCATCCTCATTCTGCTGTCGGGGGCCCTGGCCC
TGACCGGGACCCAGGCGGGTCCCCACTCCCTGAGCTATTTCTACACCGCCGTGTCCCGGC
CCGACCGCGGGGACTCCCGCTTCCTCACCGTCGGGTACGTGGACGACACGCAGTTCGTGC
GGTTCGACAACTACGCCCCGAATCCGCGGATGGAGCCTCGGGCGCCGTGGATACAGCAGG
AGGGGCAGGAGTATTGGGATGAGGAGACGCGGAAAGTCAAGGAAACCGCACAGACTTACC
GAGTGGGCCTGAACACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGGTCTCACACCA
TCCAGAGCATGTACGGCTGCGACGTGGGACCAGACGGGCTCTTCCTCCACGGGTACCATC
AGGACGCCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCGCTCCTGGACCG
CGGCGGACATGGCGGCTCAGATCTCCAAGCGCAAGAGGGAGGCGGCCAATGTGGCGGAGC
ACTGGAGGAGCTACCTGCAGGGCCTGTGTGTGGAGGGGCTCCGCAGATACCTGCAGATGG
GGAAGGACACGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33468746|dbj|BAC81554.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33468746|dbj|BAC81554.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               82-349, gnl|bosTau2|chr23 (21180741-21180474)
               

               
               82-349, gnl|Hg17|chr6 (30335574-30335841)
               

               
               82-349, gnl|Mm7|chr17 (33571220-33571487)
               


               
               382-610, gnl|bosTau2|chr20 (36655627-36655851)
               

               
               382-610, gnl|Hg17|chr6 (31347071-31346843)
               

               
               382-610, gnl|Mm7|chr17 (32077846-32077620)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-349, gnl|bosTau2|chr23 (21180741-21180474)
               

               
               82-349, gnl|Hg17|chr6 (30335574-30335841)
               

               
               82-349, gnl|Mm7|chr17 (33571220-33571487)
               


               
               382-610, gnl|bosTau2|chr20 (36655627-36655851)
               

               
               382-610, gnl|Hg17|chr6 (31347071-31346843)
               

               
               382-610, gnl|Mm7|chr17 (32077846-32077620)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.341297)
               

               
               csp (0.161186)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.341297)
               

               
               csp (0.161186)

	82-349, gnl\|bosTau2\|chr23 (21180741-21180474)
	82-349, gnl\|Hg17\|chr6 (30335574-30335841)
	82-349, gnl\|Mm7\|chr17 (33571220-33571487)

	382-610, gnl\|bosTau2\|chr20 (36655627-36655851)
	382-610, gnl\|Hg17\|chr6 (31347071-31346843)
	382-610, gnl\|Mm7\|chr17 (32077846-32077620)