Ss1.1-unkn-NcaC7_E04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCGGCCGCCCGGGCAGGTACTGGGAAGGCAAGGCAGATATGGAGACTCTCCAGAGGAT TTATGGCATTTCCTTCCCAGATCCTAAAATGTTGAAAGAATGGGAGAAGTTCCAGGAGGA AGCTAAAAACCGAGATCATAGGAAAATTGGGAGGGACCAAGAACTATATTTCTTCCATGA ACTCAGCCCTGGAAGTTGCTTTTTCCTACCTAAAGGAGCATACATTTATAATACACTCAT TGACTTCATCAGGAGCGAATATAGGAAACGAGGCTTCCAGGAGGTAGTCACCCCAAACAT CTACAACAGCCGACTCTGGGTGACCTCGGGCCACTGGCAGCACTACAGCGATAACATGTT CTCCTTTGAGGTGGAGAAGGAGCTCTTTGCTCTGAAACCCATGAACTGCCCAGGACACTG CCTTATGTTTGATCATCGGCCAAGATCCTGGCGAGAATTGCCTCTGCGAATAGCTGATTT TGGGGTGCTTCATAGGAATGAGCTGTCCGGAGCACTCACAGGACTCACGCGGGTGCGAAG GTTCCAGCAGGATGATGCTCACATATTCTGTGCCATGGAGCAGATTGAGGATGAAATAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCGGCCGCCCGGGCAGGTACTGGGAAGGCAAGGCAGATATGGAGACTCTCCAGAGGAT TTATGGCATTTCCTTCCCAGATCCTAAAATGTTGAAAGAATGGGAGAAGTTCCAGGAGGA AGCTAAAAACCGAGATCATAGGAAAATTGGGAGGGACCAAGAACTATATTTCTTCCATGA ACTCAGCCCTGGAAGTTGCTTTTTCCTACCTAAAGGAGCATACATTTATAATACACTCAT TGACTTCATCAGGAGCGAATATAGGAAACGAGGCTTCCAGGAGGTAGTCACCCCAAACAT CTACAACAGCCGACTCTGGGTGACCTCGGGCCACTGGCAGCACTACAGCGATAACATGTT CTCCTTTGAGGTGGAGAAGGAGCTCTTTGCTCTGAAACCCATGAACTGCCCAGGACACTG CCTTATGTTTGATCATCGGCCAAGATCCTGGCGAGAATTGCCTCTGCGAATAGCTGATTT TGGGGTGCTTCATAGGAATGAGCTGTCCGGAGCACTCACAGGACTCACGCGGGTGCGAAG GTTCCAGCAGGATGATGCTCACATATTCTGTGCCATGGAGCAGATTGAGGATGAAATAAA |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 20-109, + strand, RNAz p=0.700307 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 20-109, + strand, RNAz p=0.700307 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 20-155, gnl|bosTau2|chr19 (20066388-20066523) | |
| 20-155, gnl|canFam2|chr4 (77422898-77422731) | |
| 20-155, gnl|danRer3|chr5 (46063666-46063511) | |
| 20-155, gnl|dasNov1|scaffold_111489 (5238-5394) | |
| 20-155, gnl|echTel1|scaffold_309427 (161742-161909) | |
| 20-155, gnl|fr1|chrUn (175502913-175503076) | |
| 20-155, gnl|galGal2|chrZ_random (9346362-9346528) | |
| 20-155, gnl|hg17|chr5 (33493107-33493274) | |
| 20-155, gnl|Hg17|chr5 (33493131-33493266) | |
| 20-155, gnl|loxAfr1|scaffold_59268 (680-824) | |
| 20-155, gnl|mm7|chr15 (11449392-11449226) | |
| 20-155, gnl|Mm7|chr15 (11449366-11449231) | |
| 20-155, gnl|monDom2|scaffold_20 (39435600-39435433) | |
| 20-155, gnl|oryCun1|scaffold_172859 (45547-45289) | |
| 20-155, gnl|panTro1|chr4 (98832413-98832580) | |
| 20-155, gnl|rheMac2|chr7 (81834398-81834239) | |
| 20-155, gnl|rn3|chr2 (60704992-60704826) | |
| 20-155, gnl|tetNig1|chr12 (5557771-5557620) | |
| 20-155, gnl|xenTro1|scaffold_1136 (200208-200041) | |
| 253-420, gnl|bosTau2|chr19 (20068389-20068556) | |
| 253-420, gnl|Hg17|chr5 (33495556-33495723) | |
| 253-420, gnl|Mm7|chr15 (11447914-11447747) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 20-155, gnl|bosTau2|chr19 (20066388-20066523) | |
| 20-155, gnl|canFam2|chr4 (77422898-77422731) | |
| 20-155, gnl|danRer3|chr5 (46063666-46063511) | |
| 20-155, gnl|dasNov1|scaffold_111489 (5238-5394) | |
| 20-155, gnl|echTel1|scaffold_309427 (161742-161909) | |
| 20-155, gnl|fr1|chrUn (175502913-175503076) | |
| 20-155, gnl|galGal2|chrZ_random (9346362-9346528) | |
| 20-155, gnl|hg17|chr5 (33493107-33493274) | |
| 20-155, gnl|Hg17|chr5 (33493131-33493266) | |
| 20-155, gnl|loxAfr1|scaffold_59268 (680-824) | |
| 20-155, gnl|mm7|chr15 (11449392-11449226) | |
| 20-155, gnl|Mm7|chr15 (11449366-11449231) | |
| 20-155, gnl|monDom2|scaffold_20 (39435600-39435433) | |
| 20-155, gnl|oryCun1|scaffold_172859 (45547-45289) | |
| 20-155, gnl|panTro1|chr4 (98832413-98832580) | |
| 20-155, gnl|rheMac2|chr7 (81834398-81834239) | |
| 20-155, gnl|rn3|chr2 (60704992-60704826) | |
| 20-155, gnl|tetNig1|chr12 (5557771-5557620) | |
| 20-155, gnl|xenTro1|scaffold_1136 (200208-200041) | |
| 253-420, gnl|bosTau2|chr19 (20068389-20068556) | |
| 253-420, gnl|Hg17|chr5 (33495556-33495723) | |
| 253-420, gnl|Mm7|chr15 (11447914-11447747) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.140036) | |
| eru (0.120048) | |
| cty (0.10408) |