Non-Coding RNA Search

Ss1.1-unkn-RMX602767732.R1.5

Sequence:


               
               TAGGATACTTAAGGAGAAGATGCAGCATGGAGGTGGAGAGTGTAACAAATGCACAATTAT
AGAAAAACCTGGTCACATGTGTTATAAAATATGCCACTTACGTTAGCTTTTGTTGTTAAA
ACGAAAGCAAAACCTTGTATATTAATTTATTTTCAACATACTGACCATCTTTATGATCTG
CTAAAGTGATTTATTTGTTAAAGATATTTTCATTTCCATTTAAAACTAATTTATAAACTG
TGTACTCCTGGGAAGATTTGAAACTTGTCAAAATATTTTCACCGTTTAAGACAGACTTCT
GACTTAGATACTGATTTTAATATCAGTATCTGCTCTAAATATTTATGATAAAAATGCATT
ATTTTTTTAAAGAGCTTGTTGCGATTTGTGATGAGTGATAGCACTCAACCTGATTCCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGGATACTTAAGGAGAAGATGCAGCATGGAGGTGGAGAGTGTAACAAATGCACAATTAT
AGAAAAACCTGGTCACATGTGTTATAAAATATGCCACTTACGTTAGCTTTTGTTGTTAAA
ACGAAAGCAAAACCTTGTATATTAATTTATTTTCAACATACTGACCATCTTTATGATCTG
CTAAAGTGATTTATTTGTTAAAGATATTTTCATTTCCATTTAAAACTAATTTATAAACTG
TGTACTCCTGGGAAGATTTGAAACTTGTCAAAATATTTTCACCGTTTAAGACAGACTTCT
GACTTAGATACTGATTTTAATATCAGTATCTGCTCTAAATATTTATGATAAAAATGCATT
ATTTTTTTAAAGAGCTTGTTGCGATTTGTGATGAGTGATAGCACTCAACCTGATTCCTAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               300-415, + strand, RNAz p=0.558367

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               300-415, + strand, RNAz p=0.558367

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_018170, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018170, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-420, gnl|bosTau2|chr24 (16383694-16384111)
               

               
               1-420, gnl|Hg17|chr18 (31825336-31824904)
               

               
               1-420, gnl|Mm7|chr18 (24871163-24870766)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-420, gnl|bosTau2|chr24 (16383694-16384111)
               

               
               1-420, gnl|Hg17|chr18 (31825336-31824904)
               

               
               1-420, gnl|Mm7|chr18 (24871163-24870766)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fce (0.271592)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	1-420, gnl\|bosTau2\|chr24 (16383694-16384111)
	1-420, gnl\|Hg17\|chr18 (31825336-31824904)
	1-420, gnl\|Mm7\|chr18 (24871163-24870766)