Ss1.1-unkn-UNL-P-F2-aa-f-07-0-UNL.s1.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| NATCTTTTGCGCTCTGTCAGAGTCTCTCGAGTTGTCTCTAAGCCTGCACCAGCCCTGTGT TCCGCCTCCTGCCCCAGGTCGCCTGCAGCCCGTGCCGCCGTCATTCTCCACCGCGTGCTC CTGATGNTCTGGCCGAAGAGTCCAGCAGGGCCAGCAGCTCGGGCTGCGAGGCTGCGGGCA GAGCCACGCTGAGGAGCCGGCGCAGCGTGCCCCCCAGGCAGCATCGCCAGCTTCGACAGG TATGACGCCAGCCGCAGCTCCTGGCCGTACAGGGTCACAAAGGCGTCCATCTCCATGTTT CCCAGCACATCTTCCAGCACGACGCTGTCCTCCTGCTCCTCTCGCAAGCTCTGCTGCCGG TGCTCCAGGACCTTCTGCCCCTTGCTCAGGGCTCGCTGCAGGACAGCGGAGATCTGCCTT TCAGAATCCGTCTCCTCCGGCTGGTGTAGAAGCCCAGGCTCCTCGCCCGCCCATTGCTGC CGACTGGCCAGCACCCGCTGCAGCTTGGCCGCCTCCTGGTGCGCCAGCTGGTCCTCCAGC TTCCTCTCCAGCTCCTGGAGCTCCGGGCTGTGTGACTCCAGGATCTGCGCGCAGGCCGAC TTGGTCAGGGTCTCGGACGCACTCAGCTCCTGCAGGAGCAGGTCCTGGACCGTCAGGAGG GCAGTGTACGCCCACAGGGTCCTGGCCCTCCTGGCCGCCTTCTGGAACTGCAGGGAGACC AGGGACTCGGCAAAGAGCGGCCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| NATCTTTTGCGCTCTGTCAGAGTCTCTCGAGTTGTCTCTAAGCCTGCACCAGCCCTGTGT TCCGCCTCCTGCCCCAGGTCGCCTGCAGCCCGTGCCGCCGTCATTCTCCACCGCGTGCTC CTGATGNTCTGGCCGAAGAGTCCAGCAGGGCCAGCAGCTCGGGCTGCGAGGCTGCGGGCA GAGCCACGCTGAGGAGCCGGCGCAGCGTGCCCCCCAGGCAGCATCGCCAGCTTCGACAGG TATGACGCCAGCCGCAGCTCCTGGCCGTACAGGGTCACAAAGGCGTCCATCTCCATGTTT CCCAGCACATCTTCCAGCACGACGCTGTCCTCCTGCTCCTCTCGCAAGCTCTGCTGCCGG TGCTCCAGGACCTTCTGCCCCTTGCTCAGGGCTCGCTGCAGGACAGCGGAGATCTGCCTT TCAGAATCCGTCTCCTCCGGCTGGTGTAGAAGCCCAGGCTCCTCGCCCGCCCATTGCTGC CGACTGGCCAGCACCCGCTGCAGCTTGGCCGCCTCCTGGTGCGCCAGCTGGTCCTCCAGC TTCCTCTCCAGCTCCTGGAGCTCCGGGCTGTGTGACTCCAGGATCTGCGCGCAGGCCGAC TTGGTCAGGGTCTCGGACGCACTCAGCTCCTGCAGGAGCAGGTCCTGGACCGTCAGGAGG GCAGTGTACGCCCACAGGGTCCTGGCCCTCCTGGCCGCCTTCTGGAACTGCAGGGAGACC AGGGACTCGGCAAAGAGCGGCCGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 446-564, - strand, RNAz p=0.748838 | |
| 447-564, - strand, RNAz p=0.841457 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 446-564, - strand, RNAz p=0.748838 | |
| 447-564, - strand, RNAz p=0.841457 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 62-264, gnl|bosTau2|chr6 (60115664-60115463) | |
| 62-264, gnl|canFam2|chr3 (73640997-73641391) | |
| 62-264, gnl|echTel1|scaffold_116772 (813-460) | |
| 62-264, gnl|hg17|chr4 (5688237-5688605) | |
| 62-264, gnl|Hg17|chr4 (5688242-5688443) | |
| 62-264, gnl|loxAfr1|scaffold_143358 (4067-3714) | |
| 62-264, gnl|mm7|chr5 (36500738-36500349) | |
| 62-264, gnl|Mm7|chr5 (36500721-36500514) | |
| 62-264, gnl|monDom2|scaffold_10 (32936072-32936436) | |
| 62-264, gnl|oryCun1|scaffold_176339 (5186-4829) | |
| 62-264, gnl|panTro1|chr3 (5747501-5747869) | |
| 62-264, gnl|rheMac2|chr5 (3229789-3229420) | |
| 62-264, gnl|rn3|chr14 (78924318-78924742) | |
| 349-564, gnl|bosTau2|chr6 (60108219-60108004) | |
| 349-564, gnl|canFam2|chr3 (73645407-73645626) | |
| 349-564, gnl|dasNov1|scaffold_177051 (3313-3097) | |
| 349-564, gnl|hg17|chr4 (5696022-5696241) | |
| 349-564, gnl|Hg17|chr4 (5696039-5696254) | |
| 349-564, gnl|mm7|chr5 (36497359-36497135) | |
| 349-564, gnl|Mm7|chr5 (36497341-36497129) | |
| 349-564, gnl|monDom2|scaffold_10 (32943996-32944207) | |
| 349-564, gnl|oryCun1|scaffold_176339 (467-250) | |
| 349-564, gnl|panTro1|chr3 (5755308-5755527) | |
| 349-564, gnl|rheMac2|chr5 (3221444-3221225) | |
| 349-564, gnl|rn3|chr14 (78927779-78927994) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 62-264, gnl|bosTau2|chr6 (60115664-60115463) | |
| 62-264, gnl|canFam2|chr3 (73640997-73641391) | |
| 62-264, gnl|echTel1|scaffold_116772 (813-460) | |
| 62-264, gnl|hg17|chr4 (5688237-5688605) | |
| 62-264, gnl|Hg17|chr4 (5688242-5688443) | |
| 62-264, gnl|loxAfr1|scaffold_143358 (4067-3714) | |
| 62-264, gnl|mm7|chr5 (36500738-36500349) | |
| 62-264, gnl|Mm7|chr5 (36500721-36500514) | |
| 62-264, gnl|monDom2|scaffold_10 (32936072-32936436) | |
| 62-264, gnl|oryCun1|scaffold_176339 (5186-4829) | |
| 62-264, gnl|panTro1|chr3 (5747501-5747869) | |
| 62-264, gnl|rheMac2|chr5 (3229789-3229420) | |
| 62-264, gnl|rn3|chr14 (78924318-78924742) | |
| 349-564, gnl|bosTau2|chr6 (60108219-60108004) | |
| 349-564, gnl|canFam2|chr3 (73645407-73645626) | |
| 349-564, gnl|dasNov1|scaffold_177051 (3313-3097) | |
| 349-564, gnl|hg17|chr4 (5696022-5696241) | |
| 349-564, gnl|Hg17|chr4 (5696039-5696254) | |
| 349-564, gnl|mm7|chr5 (36497359-36497135) | |
| 349-564, gnl|Mm7|chr5 (36497341-36497129) | |
| 349-564, gnl|monDom2|scaffold_10 (32943996-32944207) | |
| 349-564, gnl|oryCun1|scaffold_176339 (467-250) | |
| 349-564, gnl|panTro1|chr3 (5755308-5755527) | |
| 349-564, gnl|rheMac2|chr5 (3221444-3221225) | |
| 349-564, gnl|rn3|chr14 (78927779-78927994) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.120048) |