Non-Coding RNA Search

Ss1.1-unkn-c06d10.5

Sequence:


               
               GTCTTCCAGTAGCCATGAGGTTGAAAATAGCACTTCTGATATTCAGGTTATTTCACATGA
AAAAGGAAAACTAGAGAGCGTGGTTTTNACCCATCTGCATGTTAAATGTGACTCTGATTT
ATGTGAAATAAATGCAGGGGTGCCCAAAGGAAACCTACATGAACAGGATAATCCAAAACA
CTGTTCTGAAAGTTTAAAGTGTTTGCTTTCCATCGAAGATGAAGAATCTCAACAAAGCAC
TTTATCAAGTCTGGAAAACCATTCGCAACCATCAGCTCAACCAGAAATGCATAAATATGG
TCACTTAGTTAAAGTAGAATTAGAAGAAAGTGCTGAAGATGATAAAACTGAAAACCAGAT
CCCTCAAAGAATGACGAGAAATAAAGCAAATACAGTAGCAAATCAAAGCAAACAGATTCT
GGCCAGCTGTCCACTGTTACCAGACAAAGACAGCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTCCAGTAGCCATGAGGTTGAAAATAGCACTTCTGATATTCAGGTTATTTCACATGA
AAAAGGAAAACTAGAGAGCGTGGTTTTNACCCATCTGCATGTTAAATGTGACTCTGATTT
ATGTGAAATAAATGCAGGGGTGCCCAAAGGAAACCTACATGAACAGGATAATCCAAAACA
CTGTTCTGAAAGTTTAAAGTGTTTGCTTTCCATCGAAGATGAAGAATCTCAACAAAGCAC
TTTATCAAGTCTGGAAAACCATTCGCAACCATCAGCTCAACCAGAAATGCATAAATATGG
TCACTTAGTTAAAGTAGAATTAGAAGAAAGTGCTGAAGATGATAAAACTGAAAACCAGAT
CCCTCAAAGAATGACGAGAAATAAAGCAAATACAGTAGCAAATCAAAGCAAACAGATTCT
GGCCAGCTGTCCACTGTTACCAGACAAAGACAGCGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-156, + strand, RNAz p=0.957241
               

               
               337-456, - strand, RNAz p=0.915271

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-156, + strand, RNAz p=0.957241
               

               
               337-456, - strand, RNAz p=0.915271

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-456, gnl|bosTau2|chr24 (28974110-28974568)
               

               
               1-456, gnl|canFam2|chr7 (78334753-78335832)
               

               
               1-456, gnl|dasNov1|scaffold_9213 (36793-35717)
               

               
               1-456, gnl|echTel1|scaffold_238075 (2841-3884)
               

               
               1-456, gnl|galGal2|chrUn (116420493-116421549)
               

               
               1-456, gnl|hg17|chr18 (9247369-9248439)
               

               
               1-456, gnl|Hg17|chr18 (9248101-9248553)
               

               
               1-456, gnl|loxAfr1|scaffold_22604 (39181-38117)
               

               
               1-456, gnl|mm7|chr17 (64201930-64200857)
               

               
               1-456, gnl|Mm7|chr17 (64201196-64200741)
               

               
               1-456, gnl|monDom2|scaffold_21 (23473960-23472899)
               

               
               1-456, gnl|oryCun1|scaffold_159707 (4258-5328)
               

               
               1-456, gnl|panTro1|chr17 (3417499-3416429)
               

               
               1-456, gnl|rheMac2|chr18 (5157958-5156891)
               

               
               1-456, gnl|rn3|chr9 (104973252-104972173)
               

               
               1-456, gnl|xenTro1|scaffold_333 (1029614-1028661)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-456, gnl|bosTau2|chr24 (28974110-28974568)
               

               
               1-456, gnl|canFam2|chr7 (78334753-78335832)
               

               
               1-456, gnl|dasNov1|scaffold_9213 (36793-35717)
               

               
               1-456, gnl|echTel1|scaffold_238075 (2841-3884)
               

               
               1-456, gnl|galGal2|chrUn (116420493-116421549)
               

               
               1-456, gnl|hg17|chr18 (9247369-9248439)
               

               
               1-456, gnl|Hg17|chr18 (9248101-9248553)
               

               
               1-456, gnl|loxAfr1|scaffold_22604 (39181-38117)
               

               
               1-456, gnl|mm7|chr17 (64201930-64200857)
               

               
               1-456, gnl|Mm7|chr17 (64201196-64200741)
               

               
               1-456, gnl|monDom2|scaffold_21 (23473960-23472899)
               

               
               1-456, gnl|oryCun1|scaffold_159707 (4258-5328)
               

               
               1-456, gnl|panTro1|chr17 (3417499-3416429)
               

               
               1-456, gnl|rheMac2|chr18 (5157958-5156891)
               

               
               1-456, gnl|rn3|chr9 (104973252-104972173)
               

               
               1-456, gnl|xenTro1|scaffold_333 (1029614-1028661)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               thg (0.126791)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)

	40-156, + strand, RNAz p=0.957241
	337-456, - strand, RNAz p=0.915271

	1-456, gnl\|bosTau2\|chr24 (28974110-28974568)
	1-456, gnl\|canFam2\|chr7 (78334753-78335832)
	1-456, gnl\|dasNov1\|scaffold_9213 (36793-35717)
	1-456, gnl\|echTel1\|scaffold_238075 (2841-3884)
	1-456, gnl\|galGal2\|chrUn (116420493-116421549)
	1-456, gnl\|hg17\|chr18 (9247369-9248439)
	1-456, gnl\|Hg17\|chr18 (9248101-9248553)
	1-456, gnl\|loxAfr1\|scaffold_22604 (39181-38117)
	1-456, gnl\|mm7\|chr17 (64201930-64200857)
	1-456, gnl\|Mm7\|chr17 (64201196-64200741)
	1-456, gnl\|monDom2\|scaffold_21 (23473960-23472899)
	1-456, gnl\|oryCun1\|scaffold_159707 (4258-5328)
	1-456, gnl\|panTro1\|chr17 (3417499-3416429)
	1-456, gnl\|rheMac2\|chr18 (5157958-5156891)
	1-456, gnl\|rn3\|chr9 (104973252-104972173)
	1-456, gnl\|xenTro1\|scaffold_333 (1029614-1028661)