Non-Coding RNA Search

Utr1-UTR010064C01

Sequence:


               
               ATACACTTTATTTTATTTTATTTTATTTTATTTTgtctatttgccatttcttgggccgct
cccgtggcatatggagattcccaggctaggggtcaaatcggagctgtagccactggccta
cgcgatagccacagcaactcgggatccgagccgcgtctgcaacctacaccacagctcacg
gcaacgccggatccccaacccactgagcaagggcagggaccaaacctgcaacctcatggt
tcctagtcggattcgtcaaccactgcgccacgacgggaactccTTCATAATACATTTTAA
AGGGCTGCCCGTAGATTTTAATGTATCTTTGTTTATGTTTGTCTATAAAATAAAGTCTTG
GATTTTAATCAGTTAAGCCAACAATTCTCTATTCTCTGCGCGCACCCATTGTGCAAACAG
CAGCCTCCTCAGTCGGATATACAGTCTGTTGCTTGTCTGGGTTGCTCTAGGGGACCTTGG
AGATAGCTCTTTCCAGTGGACAGTCGTGTCTGGCCTCGTGCTGTCCCCACTCCAGGCTCC
AGACGGGTGTATGGGGTACCTTTGGAGAGCCCCAGGGTACAGTGACCAGGGTCCACACTG
GCCAAGTCATCATGTCCATCCACACCAAGCTACAGAACAAGGAGCATGTAATTGAGGCCC
TACTCAAGGCCAAGTTCAAGTTCCCTGGCTGCCAGAAAATCCACATCTTCAAGGAGTGGA
GATTTACTAAGTTTCATGCAGATGAATTTGAAGACATAGTGGCTGAAAAGTGGCTTATCT
CGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATACACTTTATTTTATTTTATTTTATTTTATTTTgtctatttgccatttcttgggccgct
cccgtggcatatggagattcccaggctaggggtcaaatcggagctgtagccactggccta
cgcgatagccacagcaactcgggatccgagccgcgtctgcaacctacaccacagctcacg
gcaacgccggatccccaacccactgagcaagggcagggaccaaacctgcaacctcatggt
tcctagtcggattcgtcaaccactgcgccacgacgggaactccTTCATAATACATTTTAA
AGGGCTGCCCGTAGATTTTAATGTATCTTTGTTTATGTTTGTCTATAAAATAAAGTCTTG
GATTTTAATCAGTTAAGCCAACAATTCTCTATTCTCTGCGCGCACCCATTGTGCAAACAG
CAGCCTCCTCAGTCGGATATACAGTCTGTTGCTTGTCTGGGTTGCTCTAGGGGACCTTGG
AGATAGCTCTTTCCAGTGGACAGTCGTGTCTGGCCTCGTGCTGTCCCCACTCCAGGCTCC
AGACGGGTGTATGGGGTACCTTTGGAGAGCCCCAGGGTACAGTGACCAGGGTCCACACTG
GCCAAGTCATCATGTCCATCCACACCAAGCTACAGAACAAGGAGCATGTAATTGAGGCCC
TACTCAAGGCCAAGTTCAAGTTCCCTGGCTGCCAGAAAATCCACATCTTCAAGGAGTGGA
GATTTACTAAGTTTCATGCAGATGAATTTGAAGACATAGTGGCTGAAAAGTGGCTTATCT
CGGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55958431|emb|CAI15799.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55958431|emb|CAI15799.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               421-698, - strand, RNAz p=0.998715
               

               
               572-691, - strand, RNAz p=0.713514

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               421-698, - strand, RNAz p=0.998715
               

               
               572-691, - strand, RNAz p=0.713514

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               412-785, gnl|bosTau2|chr19 (13447326-13446957)
               

               
               412-785, gnl|Hg17|chr2 (215537235-215537608)
               

               
               412-785, gnl|Mm7|chrX (69659193-69659649)
               


               
               421-782, gnl|bosTau2|chr11 (78298279-78298632)
               

               
               421-782, gnl|Hg17|chr19 (9791700-9792066)
               

               
               421-782, gnl|Mm7|chrX (69659199-69659648)
               


               
               533-778, gnl|bosTau2|chr10 (27289800-27290045)
               

               
               533-778, gnl|Hg17|chr14 (46190363-46190118)
               

               
               533-778, gnl|Mm7|chr12 (64223121-64222876)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               412-785, gnl|bosTau2|chr19 (13447326-13446957)
               

               
               412-785, gnl|Hg17|chr2 (215537235-215537608)
               

               
               412-785, gnl|Mm7|chrX (69659193-69659649)
               


               
               421-782, gnl|bosTau2|chr11 (78298279-78298632)
               

               
               421-782, gnl|Hg17|chr19 (9791700-9792066)
               

               
               421-782, gnl|Mm7|chrX (69659199-69659648)
               


               
               533-778, gnl|bosTau2|chr10 (27289800-27290045)
               

               
               533-778, gnl|Hg17|chr14 (46190363-46190118)
               

               
               533-778, gnl|Mm7|chr12 (64223121-64222876)

	421-698, - strand, RNAz p=0.998715
	572-691, - strand, RNAz p=0.713514

	412-785, gnl\|bosTau2\|chr19 (13447326-13446957)
	412-785, gnl\|Hg17\|chr2 (215537235-215537608)
	412-785, gnl\|Mm7\|chrX (69659193-69659649)

	421-782, gnl\|bosTau2\|chr11 (78298279-78298632)
	421-782, gnl\|Hg17\|chr19 (9791700-9792066)
	421-782, gnl\|Mm7\|chrX (69659199-69659648)

	533-778, gnl\|bosTau2\|chr10 (27289800-27290045)
	533-778, gnl\|Hg17\|chr14 (46190363-46190118)
	533-778, gnl\|Mm7\|chr12 (64223121-64222876)