nca10b_g9.z1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAGGACTACGGCTGAGGGAGTAGCTCGTGTCCGAAAATCCAAGGGCAAATTTGCCTTTCT CCTGGAGTCCACTATGAATGAGTACATTGAGCAGCGAAAGCCATGTGACACGATGAAAGT GGGAGGAAATCTGGATTCCAAAGGCTATGGAGTAGCAACGCCCAAGGGTTCTTCATTAGG AAATGCTGTTAACCTCGCAGTTTTAAAACTGAATGAACAAGGCCTCTTGGACAAATTGAA AAACAAATGGTGGTACGACAAAGGAGAATGTGGCAGCGGGGGAGGTGACTCCAAGGACAA GACGAGTGCCTTGAGCCTGAGCAACGTAGCAGGCGTCTTCTACATTCTGGTTGGCGGCTT GGGCTTGGCAATGCTGGTGGCTTTGATAGAGTTCTGTTACAAGTCCAGGGCAGAAGCAAA GAGAATGAAGCTGACCTTTTCTGAAGCCATAAGAAACAAAGCCAGATTATCCATCACTGG GAGTGTGGGTGAAAATGGCCGCGTCTTGACACCCGACTGCCCAAAGGCTGTACACACTGG AACTGCAATTAGACAAAGTTCAGGATTGGCTGTCATTGCATCGGACCTACCATAAAAACC AAAAAAATAATTGAGTGCCTTAATTAAACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAGGACTACGGCTGAGGGAGTAGCTCGTGTCCGAAAATCCAAGGGCAAATTTGCCTTTCT CCTGGAGTCCACTATGAATGAGTACATTGAGCAGCGAAAGCCATGTGACACGATGAAAGT GGGAGGAAATCTGGATTCCAAAGGCTATGGAGTAGCAACGCCCAAGGGTTCTTCATTAGG AAATGCTGTTAACCTCGCAGTTTTAAAACTGAATGAACAAGGCCTCTTGGACAAATTGAA AAACAAATGGTGGTACGACAAAGGAGAATGTGGCAGCGGGGGAGGTGACTCCAAGGACAA GACGAGTGCCTTGAGCCTGAGCAACGTAGCAGGCGTCTTCTACATTCTGGTTGGCGGCTT GGGCTTGGCAATGCTGGTGGCTTTGATAGAGTTCTGTTACAAGTCCAGGGCAGAAGCAAA GAGAATGAAGCTGACCTTTTCTGAAGCCATAAGAAACAAAGCCAGATTATCCATCACTGG GAGTGTGGGTGAAAATGGCCGCGTCTTGACACCCGACTGCCCAAAGGCTGTACACACTGG AACTGCAATTAGACAAAGTTCAGGATTGGCTGTCATTGCATCGGACCTACCATAAAAACC AAAAAAATAATTGAGTGCCTTAATTAAACT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 3-121, - strand, RNAz p=0.64857 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-121, - strand, RNAz p=0.64857 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 3-171, gnl|bosTau2|chr7 (43720824-43720992) | |
| 3-171, gnl|canFam2|chr4 (59044211-59043951) | |
| 3-171, gnl|danRer3|chr14 (55662643-55662389) | |
| 3-171, gnl|dasNov1|scaffold_6067 (56217-55957) | |
| 3-171, gnl|echTel1|scaffold_324932 (103470-103211) | |
| 3-171, gnl|fr1|chrUn (113966416-113966161) | |
| 3-171, gnl|galGal2|chr13 (11295137-11294877) | |
| 3-171, gnl|hg17|chr5 (153129919-153130179) | |
| 3-171, gnl|Hg17|chr5 (153129991-153130159) | |
| 3-171, gnl|loxAfr1|scaffold_4501 (67560-67820) | |
| 3-171, gnl|mm7|chr11 (57370791-57371050) | |
| 3-171, gnl|Mm7|chr11 (57370863-57371031) | |
| 3-171, gnl|monDom2|scaffold_6 (52494360-52494102) | |
| 3-171, gnl|oryCun1|scaffold_200843 (4822-5082) | |
| 3-171, gnl|panTro1|chr4 (160038380-160038640) | |
| 3-171, gnl|rheMac2|chr6 (150120553-150120813) | |
| 3-171, gnl|rn3|chr2 (172222603-172222345) | |
| 3-171, gnl|tetNig1|chr1 (3285023-3285278) | |
| 3-171, gnl|xenTro1|scaffold_479 (128767-128507) | |
| 180-299, gnl|bosTau2|chr7 (43744141-43744260) | |
| 180-299, gnl|canFam2|chr4 (59023502-59023326) | |
| 180-299, gnl|danRer3|chr14 (55655238-55655065) | |
| 180-299, gnl|dasNov1|scaffold_35274 (1159-1338) | |
| 180-299, gnl|echTel1|scaffold_315238 (71125-71297) | |
| 180-299, gnl|fr1|chrUn (113963317-113963152) | |
| 180-299, gnl|galGal2|chr13 (11289987-11289817) | |
| 180-299, gnl|hg17|chr5 (153154349-153154526) | |
| 180-299, gnl|Hg17|chr5 (153154373-153154492) | |
| 180-299, gnl|loxAfr1|scaffold_4501 (90723-90899) | |
| 180-299, gnl|mm7|chr11 (57391289-57391461) | |
| 180-299, gnl|Mm7|chr11 (57391313-57391432) | |
| 180-299, gnl|monDom2|scaffold_6 (52461233-52461060) | |
| 180-299, gnl|oryCun1|scaffold_200843 (28710-28885) | |
| 180-299, gnl|panTro1|chr4 (160062828-160063005) | |
| 180-299, gnl|rheMac2|chr6 (150145804-150145982) | |
| 180-299, gnl|rn3|chr2 (172221527-172221343) | |
| 180-299, gnl|tetNig1|chr1 (3288034-3288195) | |
| 180-299, gnl|xenTro1|scaffold_479 (121294-121123) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-171, gnl|bosTau2|chr7 (43720824-43720992) | |
| 3-171, gnl|canFam2|chr4 (59044211-59043951) | |
| 3-171, gnl|danRer3|chr14 (55662643-55662389) | |
| 3-171, gnl|dasNov1|scaffold_6067 (56217-55957) | |
| 3-171, gnl|echTel1|scaffold_324932 (103470-103211) | |
| 3-171, gnl|fr1|chrUn (113966416-113966161) | |
| 3-171, gnl|galGal2|chr13 (11295137-11294877) | |
| 3-171, gnl|hg17|chr5 (153129919-153130179) | |
| 3-171, gnl|Hg17|chr5 (153129991-153130159) | |
| 3-171, gnl|loxAfr1|scaffold_4501 (67560-67820) | |
| 3-171, gnl|mm7|chr11 (57370791-57371050) | |
| 3-171, gnl|Mm7|chr11 (57370863-57371031) | |
| 3-171, gnl|monDom2|scaffold_6 (52494360-52494102) | |
| 3-171, gnl|oryCun1|scaffold_200843 (4822-5082) | |
| 3-171, gnl|panTro1|chr4 (160038380-160038640) | |
| 3-171, gnl|rheMac2|chr6 (150120553-150120813) | |
| 3-171, gnl|rn3|chr2 (172222603-172222345) | |
| 3-171, gnl|tetNig1|chr1 (3285023-3285278) | |
| 3-171, gnl|xenTro1|scaffold_479 (128767-128507) | |
| 180-299, gnl|bosTau2|chr7 (43744141-43744260) | |
| 180-299, gnl|canFam2|chr4 (59023502-59023326) | |
| 180-299, gnl|danRer3|chr14 (55655238-55655065) | |
| 180-299, gnl|dasNov1|scaffold_35274 (1159-1338) | |
| 180-299, gnl|echTel1|scaffold_315238 (71125-71297) | |
| 180-299, gnl|fr1|chrUn (113963317-113963152) | |
| 180-299, gnl|galGal2|chr13 (11289987-11289817) | |
| 180-299, gnl|hg17|chr5 (153154349-153154526) | |
| 180-299, gnl|Hg17|chr5 (153154373-153154492) | |
| 180-299, gnl|loxAfr1|scaffold_4501 (90723-90899) | |
| 180-299, gnl|mm7|chr11 (57391289-57391461) | |
| 180-299, gnl|Mm7|chr11 (57391313-57391432) | |
| 180-299, gnl|monDom2|scaffold_6 (52461233-52461060) | |
| 180-299, gnl|oryCun1|scaffold_200843 (28710-28885) | |
| 180-299, gnl|panTro1|chr4 (160062828-160063005) | |
| 180-299, gnl|rheMac2|chr6 (150145804-150145982) | |
| 180-299, gnl|rn3|chr2 (172221527-172221343) | |
| 180-299, gnl|tetNig1|chr1 (3288034-3288195) | |
| 180-299, gnl|xenTro1|scaffold_479 (121294-121123) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) |