Non-Coding RNA Search

nep11c_i18.z1

Sequence:


               
               GTAGGGGTGGGATGCACAGAAAGAAAAGGCACCCCCACCCTGAATCCCTGGCATGCTCAC
AGTCAGGCTCTAGGGGGACCAAGAGAAGGGCAGAGGCCCCCAAGCCCTTCTCTTCCCCAT
GAGAAAGCCAAAGGGACACATCACATCACAGTCCGCTTTGTGGATGATCTCATGGAACAT
TCCTTACACATCCAGCCTCCCACACCCCCGACACTTCCCATCTCTCTTACCTCCGCTGTC
AGGCACCTAAGAAACGTGAACTCCTTTTAACGCCCACCTAATACATGCATGATTGCAAGT
ATCAAAAGGAGATACCTCAAAATCCCATTCCGAATCCCAAAGCCAAGTGCCAGGATTTCA
GGATCACTTGGGACCTGCCAATGGTAGGCACACAGAATCAAGAAGTGGTCTTGGGCAGTA
AATTTACCTGCTCAGGTGTGTGGCACTTACCCTTTTGAAAATACATATTTTTTCCTGAGC
TCACACTGGCACCTGATGGCTGAGAAATGCCCAGCACAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGGGGTGGGATGCACAGAAAGAAAAGGCACCCCCACCCTGAATCCCTGGCATGCTCAC
AGTCAGGCTCTAGGGGGACCAAGAGAAGGGCAGAGGCCCCCAAGCCCTTCTCTTCCCCAT
GAGAAAGCCAAAGGGACACATCACATCACAGTCCGCTTTGTGGATGATCTCATGGAACAT
TCCTTACACATCCAGCCTCCCACACCCCCGACACTTCCCATCTCTCTTACCTCCGCTGTC
AGGCACCTAAGAAACGTGAACTCCTTTTAACGCCCACCTAATACATGCATGATTGCAAGT
ATCAAAAGGAGATACCTCAAAATCCCATTCCGAATCCCAAAGCCAAGTGCCAGGATTTCA
GGATCACTTGGGACCTGCCAATGGTAGGCACACAGAATCAAGAAGTGGTCTTGGGCAGTA
AATTTACCTGCTCAGGTGTGTGGCACTTACCCTTTTGAAAATACATATTTTTTCCTGAGC
TCACACTGGCACCTGATGGCTGAGAAATGCCCAGCACAAAGG

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               5-178, gnl|bosTau2|chr5 (19862268-19862106)
               

               
               5-178, gnl|canFam2|chr27 (5678421-5678256)
               

               
               5-178, gnl|echTel1|scaffold_78741 (4689-4848)
               

               
               5-178, gnl|hg17|chr12 (51074572-51074773)
               

               
               5-178, gnl|mm7|chr15 (101527391-101527639)
               

               
               5-178, gnl|Mm7|chr15 (101527664-101527495)
               

               
               5-178, gnl|panTro1|chr10 (52297925-52298126)
               

               
               5-178, gnl|rheMac2|chr11 (49498147-49498349)
               

               
               5-178, gnl|rn3|chr7 (140372363-140372607)
               


               
               250-522, gnl|bosTau2|chr5 (19862095-19861819)
               

               
               250-522, gnl|Hg17|chr12 (51074610-51074304)
               

               
               250-522, gnl|Mm7|chr15 (101527427-101527185)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-178, gnl|bosTau2|chr5 (19862268-19862106)
               

               
               5-178, gnl|canFam2|chr27 (5678421-5678256)
               

               
               5-178, gnl|echTel1|scaffold_78741 (4689-4848)
               

               
               5-178, gnl|hg17|chr12 (51074572-51074773)
               

               
               5-178, gnl|mm7|chr15 (101527391-101527639)
               

               
               5-178, gnl|Mm7|chr15 (101527664-101527495)
               

               
               5-178, gnl|panTro1|chr10 (52297925-52298126)
               

               
               5-178, gnl|rheMac2|chr11 (49498147-49498349)
               

               
               5-178, gnl|rn3|chr7 (140372363-140372607)
               


               
               250-522, gnl|bosTau2|chr5 (19862095-19861819)
               

               
               250-522, gnl|Hg17|chr12 (51074610-51074304)
               

               
               250-522, gnl|Mm7|chr15 (101527427-101527185)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	5-178, gnl\|bosTau2\|chr5 (19862268-19862106)
	5-178, gnl\|canFam2\|chr27 (5678421-5678256)
	5-178, gnl\|echTel1\|scaffold_78741 (4689-4848)
	5-178, gnl\|hg17\|chr12 (51074572-51074773)
	5-178, gnl\|mm7\|chr15 (101527391-101527639)
	5-178, gnl\|Mm7\|chr15 (101527664-101527495)
	5-178, gnl\|panTro1\|chr10 (52297925-52298126)
	5-178, gnl\|rheMac2\|chr11 (49498147-49498349)
	5-178, gnl\|rn3\|chr7 (140372363-140372607)

	250-522, gnl\|bosTau2\|chr5 (19862095-19861819)
	250-522, gnl\|Hg17\|chr12 (51074610-51074304)
	250-522, gnl\|Mm7\|chr15 (101527427-101527185)