Non-Coding RNA Search

nep20c_a19.z1

Sequence:


               
               GGGAGGTGGGGGGGGATGGCATCAGTGGAGTCAGCAGTTGTTCAGAGCTTTACTTCCTTT
GCCACATGGAGGGTGAACACAGGGACATGCAACCAGGAGGTGATGGATGCTTATATATGT
TAAGTACCAACTACATGCCAGGCTCCTTACTTCCACTGCCTCAAATTCTCACTCAATCCT
GCAAGGCAGATGCAAGCAGCATCCTTGGGTCAGATGAGAAATTTCATCATCTGGAGGGCT
GCAGAATTTGCCTCTGTCACCCACTGAGTACCAGTGTCAGGAGTTGAGCCCAGACCTGGC
TGCGTCCCAGGTCCATGTGCTTTCCATGGCATGTCACTGTGTCTTTAATAAAGGGAATGT
GAAGTTCACTTTTCTTTTAATGAGGGACTTATGTTGCCTTTCTGTCGGCGGGTATGTGGT
TTATCTTTGGGCTTCTCCCTGGGGTTATGTCTTGCAGTAGCTTCTGATTCTCAATTCCTG
TTGCCAGGAGCTGTGGTCAATGTGGGGGGAGCTTACTCTGTCTCTGGTGGTGCCAACCAG
CCCGGAAGTCCTGGTTCTTGCTGTAAATATTTCTGAGAATGGCAACACTTAGTCCTTCCT
TTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAGGTGGGGGGGGATGGCATCAGTGGAGTCAGCAGTTGTTCAGAGCTTTACTTCCTTT
GCCACATGGAGGGTGAACACAGGGACATGCAACCAGGAGGTGATGGATGCTTATATATGT
TAAGTACCAACTACATGCCAGGCTCCTTACTTCCACTGCCTCAAATTCTCACTCAATCCT
GCAAGGCAGATGCAAGCAGCATCCTTGGGTCAGATGAGAAATTTCATCATCTGGAGGGCT
GCAGAATTTGCCTCTGTCACCCACTGAGTACCAGTGTCAGGAGTTGAGCCCAGACCTGGC
TGCGTCCCAGGTCCATGTGCTTTCCATGGCATGTCACTGTGTCTTTAATAAAGGGAATGT
GAAGTTCACTTTTCTTTTAATGAGGGACTTATGTTGCCTTTCTGTCGGCGGGTATGTGGT
TTATCTTTGGGCTTCTCCCTGGGGTTATGTCTTGCAGTAGCTTCTGATTCTCAATTCCTG
TTGCCAGGAGCTGTGGTCAATGTGGGGGGAGCTTACTCTGTCTCTGGTGGTGCCAACCAG
CCCGGAAGTCCTGGTTCTTGCTGTAAATATTTCTGAGAATGGCAACACTTAGTCCTTCCT
TTGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               184-288, - strand, RNAz p=0.896096

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               184-288, - strand, RNAz p=0.896096

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               148-601, gnl|bosTau2|chr5 (20072495-20072038)
               

               
               148-601, gnl|canFam2|chr27 (5531862-5531040)
               

               
               148-601, gnl|hg17|chr12 (51245663-51246475)
               

               
               148-601, gnl|Hg17|chr12 (51246352-51245901)
               

               
               148-601, gnl|loxAfr1|scaffold_14351 (38355-39159)
               

               
               148-601, gnl|mm7|chr15 (101739276-101740042)
               

               
               148-601, gnl|Mm7|chr15 (101739946-101739490)
               

               
               148-601, gnl|oryCun1|scaffold_149807 (6060-6755)
               

               
               148-601, gnl|panTro1|chr10 (52469669-52470481)
               

               
               148-601, gnl|rheMac2|chr11 (49643795-49644607)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               148-601, gnl|bosTau2|chr5 (20072495-20072038)
               

               
               148-601, gnl|canFam2|chr27 (5531862-5531040)
               

               
               148-601, gnl|hg17|chr12 (51245663-51246475)
               

               
               148-601, gnl|Hg17|chr12 (51246352-51245901)
               

               
               148-601, gnl|loxAfr1|scaffold_14351 (38355-39159)
               

               
               148-601, gnl|mm7|chr15 (101739276-101740042)
               

               
               148-601, gnl|Mm7|chr15 (101739946-101739490)
               

               
               148-601, gnl|oryCun1|scaffold_149807 (6060-6755)
               

               
               148-601, gnl|panTro1|chr10 (52469669-52470481)
               

               
               148-601, gnl|rheMac2|chr11 (49643795-49644607)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	148-601, gnl\|bosTau2\|chr5 (20072495-20072038)
	148-601, gnl\|canFam2\|chr27 (5531862-5531040)
	148-601, gnl\|hg17\|chr12 (51245663-51246475)
	148-601, gnl\|Hg17\|chr12 (51246352-51245901)
	148-601, gnl\|loxAfr1\|scaffold_14351 (38355-39159)
	148-601, gnl\|mm7\|chr15 (101739276-101740042)
	148-601, gnl\|Mm7\|chr15 (101739946-101739490)
	148-601, gnl\|oryCun1\|scaffold_149807 (6060-6755)
	148-601, gnl\|panTro1\|chr10 (52469669-52470481)
	148-601, gnl\|rheMac2\|chr11 (49643795-49644607)