Non-Coding RNA Search

nep33c_b11.z1

Sequence:


               
               AACTCTTCCTGTTGCTTCCACTGCCTCCACCTCCATAGTCGTGGTGACCACAGCTGCATC
TTCTTCCATGGTGACCACACCAACTTCATCTCTGAGCTCTGTTCCCATTATACTCTCTGG
AATTGATGGGAGTCCACCAGTGAGCCAGAGGCCAGAAAATGCCCCTCAGATTCCAGTGGC
TACTCCACAGGTCTCTCCTAACGCAGTGAAACGTACTGGACCTCGACTGTTGTTGATTCC
AGTGCAGCAGGGTTCTCCTACTCTTAGACCTGTCCCAAACACACAAGTCCAGGGACATCG
GATGGTCTTGCAGCCTGTTAGGAGCCCAAGTGGAATGAACCTGTTCAGGCATCCTAATGG
GCAGATTGTCCAGCTCCTCCCTTTGCATCAGCTTCGAGGCTCTAATTCCCAGCCCAACTT
ACAGCCTGTCATGTTTCGGAACCCAGGGTCTGTGATGGGAATCCGGTTACCTACTCCTTC
CAAACCTTCAGAGACTCCACCATCTTCCACTTCGTCCTCTACTTTCCCTGTTATGAATCC
TGTAATTCAGGCTGTAGGGTCTTCTCCCACAATGAATGTTATCACTCAGGCACCATCATT
ACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTCTTCCTGTTGCTTCCACTGCCTCCACCTCCATAGTCGTGGTGACCACAGCTGCATC
TTCTTCCATGGTGACCACACCAACTTCATCTCTGAGCTCTGTTCCCATTATACTCTCTGG
AATTGATGGGAGTCCACCAGTGAGCCAGAGGCCAGAAAATGCCCCTCAGATTCCAGTGGC
TACTCCACAGGTCTCTCCTAACGCAGTGAAACGTACTGGACCTCGACTGTTGTTGATTCC
AGTGCAGCAGGGTTCTCCTACTCTTAGACCTGTCCCAAACACACAAGTCCAGGGACATCG
GATGGTCTTGCAGCCTGTTAGGAGCCCAAGTGGAATGAACCTGTTCAGGCATCCTAATGG
GCAGATTGTCCAGCTCCTCCCTTTGCATCAGCTTCGAGGCTCTAATTCCCAGCCCAACTT
ACAGCCTGTCATGTTTCGGAACCCAGGGTCTGTGATGGGAATCCGGTTACCTACTCCTTC
CAAACCTTCAGAGACTCCACCATCTTCCACTTCGTCCTCTACTTTCCCTGTTATGAATCC
TGTAATTCAGGCTGTAGGGTCTTCTCCCACAATGAATGTTATCACTCAGGCACCATCATT
ACT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-163, - strand, RNAz p=0.855198
               

               
               45-163, - strand, RNAz p=0.960323

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-163, - strand, RNAz p=0.855198
               

               
               45-163, - strand, RNAz p=0.960323

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-163, gnl|bosTau2|chr10 (25200248-25200086)
               

               
               1-163, gnl|canFam2|chr30 (11773386-11773840)
               

               
               1-163, gnl|dasNov1|scaffold_8078 (55080-54626)
               

               
               1-163, gnl|echTel1|scaffold_313701 (38552-39006)
               

               
               1-163, gnl|fr1|chrUn (303307615-303308027)
               

               
               1-163, gnl|galGal2|chr5 (22255787-22256244)
               

               
               1-163, gnl|hg17|chr15 (39822166-39822620)
               

               
               1-163, gnl|Hg17|chr15 (39822508-39822670)
               

               
               1-163, gnl|loxAfr1|scaffold_3669 (63486-63032)
               

               
               1-163, gnl|mm7|chr2 (119682201-119682652)
               

               
               1-163, gnl|Mm7|chr2 (119682540-119682702)
               

               
               1-163, gnl|monDom2|scaffold_12 (171987-171533)
               

               
               1-163, gnl|oryCun1|scaffold_211215 (71855-72309)
               

               
               1-163, gnl|panTro1|chr16 (39795310-39795764)
               

               
               1-163, gnl|rheMac2|chr7 (20161819-20162273)
               

               
               1-163, gnl|rn3|chr3 (106348866-106349317)
               

               
               1-163, gnl|xenTro1|scaffold_33 (2810001-2809550)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-163, gnl|bosTau2|chr10 (25200248-25200086)
               

               
               1-163, gnl|canFam2|chr30 (11773386-11773840)
               

               
               1-163, gnl|dasNov1|scaffold_8078 (55080-54626)
               

               
               1-163, gnl|echTel1|scaffold_313701 (38552-39006)
               

               
               1-163, gnl|fr1|chrUn (303307615-303308027)
               

               
               1-163, gnl|galGal2|chr5 (22255787-22256244)
               

               
               1-163, gnl|hg17|chr15 (39822166-39822620)
               

               
               1-163, gnl|Hg17|chr15 (39822508-39822670)
               

               
               1-163, gnl|loxAfr1|scaffold_3669 (63486-63032)
               

               
               1-163, gnl|mm7|chr2 (119682201-119682652)
               

               
               1-163, gnl|Mm7|chr2 (119682540-119682702)
               

               
               1-163, gnl|monDom2|scaffold_12 (171987-171533)
               

               
               1-163, gnl|oryCun1|scaffold_211215 (71855-72309)
               

               
               1-163, gnl|panTro1|chr16 (39795310-39795764)
               

               
               1-163, gnl|rheMac2|chr7 (20161819-20162273)
               

               
               1-163, gnl|rn3|chr3 (106348866-106349317)
               

               
               1-163, gnl|xenTro1|scaffold_33 (2810001-2809550)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	40-163, - strand, RNAz p=0.855198
	45-163, - strand, RNAz p=0.960323

	1-163, gnl\|bosTau2\|chr10 (25200248-25200086)
	1-163, gnl\|canFam2\|chr30 (11773386-11773840)
	1-163, gnl\|dasNov1\|scaffold_8078 (55080-54626)
	1-163, gnl\|echTel1\|scaffold_313701 (38552-39006)
	1-163, gnl\|fr1\|chrUn (303307615-303308027)
	1-163, gnl\|galGal2\|chr5 (22255787-22256244)
	1-163, gnl\|hg17\|chr15 (39822166-39822620)
	1-163, gnl\|Hg17\|chr15 (39822508-39822670)
	1-163, gnl\|loxAfr1\|scaffold_3669 (63486-63032)
	1-163, gnl\|mm7\|chr2 (119682201-119682652)
	1-163, gnl\|Mm7\|chr2 (119682540-119682702)
	1-163, gnl\|monDom2\|scaffold_12 (171987-171533)
	1-163, gnl\|oryCun1\|scaffold_211215 (71855-72309)
	1-163, gnl\|panTro1\|chr16 (39795310-39795764)
	1-163, gnl\|rheMac2\|chr7 (20161819-20162273)
	1-163, gnl\|rn3\|chr3 (106348866-106349317)
	1-163, gnl\|xenTro1\|scaffold_33 (2810001-2809550)