nep33c_j23.z1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCATGGTGGAAGCTCCCGTTCTCGTAGCAGTATTTTCCATTCTGGAAAAAACCAAGGAC TTCATGAAAATAACATACCCGACAATGAAACGGGGAGGAAAGAAGACAAGAGAGAACGCA AACAGTTTGAGGCTGAGGATTTTCCGTCTTTAAATCCTGAATATGAGAGAGAACCAAATC AGAATAAATCTTTAGCTGCAGGTGTATGGGAATATCCCCCGAATCCTAAATCTAGAACTC AAAGGATGCTGGTCATTAAGAAAGGTAATACAAAAGACTTACAGCTATCTGGATTCCCAG TAGTAGGAAATCTTCAGTCACAGCCCGTTAAGAATGGGACTGGTCCAAGTGTTTATAAAG GCTTAGTCCCTAAACCTGCTGCTCCACCTACAAAACCTACACAATGGAAAAGCCAAACTA AAGAAAATAAAGTTGGAACTTCTTTCCCTCATGAGTCTACATATGGTGTTGGCAACTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCATGGTGGAAGCTCCCGTTCTCGTAGCAGTATTTTCCATTCTGGAAAAAACCAAGGAC TTCATGAAAATAACATACCCGACAATGAAACGGGGAGGAAAGAAGACAAGAGAGAACGCA AACAGTTTGAGGCTGAGGATTTTCCGTCTTTAAATCCTGAATATGAGAGAGAACCAAATC AGAATAAATCTTTAGCTGCAGGTGTATGGGAATATCCCCCGAATCCTAAATCTAGAACTC AAAGGATGCTGGTCATTAAGAAAGGTAATACAAAAGACTTACAGCTATCTGGATTCCCAG TAGTAGGAAATCTTCAGTCACAGCCCGTTAAGAATGGGACTGGTCCAAGTGTTTATAAAG GCTTAGTCCCTAAACCTGCTGCTCCACCTACAAAACCTACACAATGGAAAAGCCAAACTA AAGAAAATAAAGTTGGAACTTCTTTCCCTCATGAGTCTACATATGGTGTTGGCAACTTT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 210-328, - strand, RNAz p=0.984397 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 210-328, - strand, RNAz p=0.984397 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-143, gnl|bosTau2|chr20 (12179440-12179582) | |
| 1-143, gnl|canFam2|chr2 (47155109-47155339) | |
| 1-143, gnl|danRer3|chrUn (37965662-37965411) | |
| 1-143, gnl|dasNov1|scaffold_142797 (3879-3662) | |
| 1-143, gnl|echTel1|scaffold_171081 (1347-1117) | |
| 1-143, gnl|galGal2|chrZ (1005914-1006144) | |
| 1-143, gnl|hg17|chr5 (56562687-56562917) | |
| 1-143, gnl|Hg17|chr5 (56562763-56562905) | |
| 1-143, gnl|mm7|chr13 (108609042-108608812) | |
| 1-143, gnl|Mm7|chr13 (108608964-108608822) | |
| 1-143, gnl|monDom2|scaffold_27 (20045694-20045924) | |
| 1-143, gnl|oryCun1|scaffold_209024 (4-218) | |
| 1-143, gnl|panTro1|chr4 (59597162-59596932) | |
| 1-143, gnl|rheMac2|chr6 (54895853-54896083) | |
| 1-143, gnl|rn3|chr2 (42702381-42702151) | |
| 210-395, gnl|bosTau2|chr20 (12188231-12188416) | |
| 210-395, gnl|canFam2|chr2 (47166364-47166583) | |
| 210-395, gnl|dasNov1|scaffold_142797 (3595-3412) | |
| 210-395, gnl|echTel1|scaffold_193928 (769-551) | |
| 210-395, gnl|galGal2|chrZ (1008326-1008524) | |
| 210-395, gnl|hg17|chr5 (56577884-56578103) | |
| 210-395, gnl|Hg17|chr5 (56577883-56578068) | |
| 210-395, gnl|loxAfr1|scaffold_26505 (26872-27091) | |
| 210-395, gnl|mm7|chr13 (108596616-108596402) | |
| 210-395, gnl|Mm7|chr13 (108596615-108596430) | |
| 210-395, gnl|monDom2|scaffold_27 (20054625-20054824) | |
| 210-395, gnl|oryCun1|scaffold_166914 (28391-28219) | |
| 210-395, gnl|panTro1|chr4 (59581974-59581755) | |
| 210-395, gnl|rheMac2|chr6 (54910249-54910468) | |
| 210-395, gnl|rn3|chr2 (42689691-42689492) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-143, gnl|bosTau2|chr20 (12179440-12179582) | |
| 1-143, gnl|canFam2|chr2 (47155109-47155339) | |
| 1-143, gnl|danRer3|chrUn (37965662-37965411) | |
| 1-143, gnl|dasNov1|scaffold_142797 (3879-3662) | |
| 1-143, gnl|echTel1|scaffold_171081 (1347-1117) | |
| 1-143, gnl|galGal2|chrZ (1005914-1006144) | |
| 1-143, gnl|hg17|chr5 (56562687-56562917) | |
| 1-143, gnl|Hg17|chr5 (56562763-56562905) | |
| 1-143, gnl|mm7|chr13 (108609042-108608812) | |
| 1-143, gnl|Mm7|chr13 (108608964-108608822) | |
| 1-143, gnl|monDom2|scaffold_27 (20045694-20045924) | |
| 1-143, gnl|oryCun1|scaffold_209024 (4-218) | |
| 1-143, gnl|panTro1|chr4 (59597162-59596932) | |
| 1-143, gnl|rheMac2|chr6 (54895853-54896083) | |
| 1-143, gnl|rn3|chr2 (42702381-42702151) | |
| 210-395, gnl|bosTau2|chr20 (12188231-12188416) | |
| 210-395, gnl|canFam2|chr2 (47166364-47166583) | |
| 210-395, gnl|dasNov1|scaffold_142797 (3595-3412) | |
| 210-395, gnl|echTel1|scaffold_193928 (769-551) | |
| 210-395, gnl|galGal2|chrZ (1008326-1008524) | |
| 210-395, gnl|hg17|chr5 (56577884-56578103) | |
| 210-395, gnl|Hg17|chr5 (56577883-56578068) | |
| 210-395, gnl|loxAfr1|scaffold_26505 (26872-27091) | |
| 210-395, gnl|mm7|chr13 (108596616-108596402) | |
| 210-395, gnl|Mm7|chr13 (108596615-108596430) | |
| 210-395, gnl|monDom2|scaffold_27 (20054625-20054824) | |
| 210-395, gnl|oryCun1|scaffold_166914 (28391-28219) | |
| 210-395, gnl|panTro1|chr4 (59581974-59581755) | |
| 210-395, gnl|rheMac2|chr6 (54910249-54910468) | |
| 210-395, gnl|rn3|chr2 (42689691-42689492) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) |