Non-Coding RNA Search

pigca_1386.z1

Sequence:


               
               GCACAGTAAAATCAGTGTCTTTGTCATTTCACTAACTACACATCCAGGTTTATAAAGGTC
ACATTATTACAGAGGAAAAAAAAAAATGCAGCTGCTGACAGGATCGCTAAGAGCAACAAA
TACCAGGAAAGTCTCAAAACTCTGACCACTTTTTTCTCAACTGGAGTTTTGCCAATGATT
TCTCCACCGCTTTGGAAACTTGTTCTTGCCTCTCCCCTTTTCCAAAAGATCATCCTCACC
CCAGGGGGAAAAAAAAAAAAATGAAGACCTCAAAACCCAGGACAAATTGCTCATTTAAAG
AACTGGAATTAAGGATGCAGGGGCTCTTCTTCCTTAAAAGCTCATCACTCTGCAGAAAGA
ATCCGAACCCAGTCCTGATTTTTCCTGAGCAATGGAGCAGTTTTTGGTTTGGGGTTAATT
TTAATTTAAAAAAAAAAAAAAAAAGGCACCATTCTTGAGAAGCTGTTGCTATGAGACTTC
CCTGGCCTCAACAGATGGCCCCAGAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACAGTAAAATCAGTGTCTTTGTCATTTCACTAACTACACATCCAGGTTTATAAAGGTC
ACATTATTACAGAGGAAAAAAAAAAATGCAGCTGCTGACAGGATCGCTAAGAGCAACAAA
TACCAGGAAAGTCTCAAAACTCTGACCACTTTTTTCTCAACTGGAGTTTTGCCAATGATT
TCTCCACCGCTTTGGAAACTTGTTCTTGCCTCTCCCCTTTTCCAAAAGATCATCCTCACC
CCAGGGGGAAAAAAAAAAAAATGAAGACCTCAAAACCCAGGACAAATTGCTCATTTAAAG
AACTGGAATTAAGGATGCAGGGGCTCTTCTTCCTTAAAAGCTCATCACTCTGCAGAAAGA
ATCCGAACCCAGTCCTGATTTTTCCTGAGCAATGGAGCAGTTTTTGGTTTGGGGTTAATT
TTAATTTAAAAAAAAAAAAAAAAAGGCACCATTCTTGAGAAGCTGTTGCTATGAGACTTC
CCTGGCCTCAACAGATGGCCCCAGAGCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               75-188, - strand, RNAz p=0.691169

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-188, - strand, RNAz p=0.691169

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               24-508, gnl|bosTau2|chr6 (47790006-47789528)
               

               
               24-508, gnl|canFam2|chr32 (4186961-4187567)
               

               
               24-508, gnl|dasNov1|scaffold_8861 (5959-5365)
               

               
               24-508, gnl|echTel1|scaffold_322461 (7334-7974)
               

               
               24-508, gnl|hg17|chr4 (77868682-77869302)
               

               
               24-508, gnl|Hg17|chr4 (77869264-77868778)
               

               
               24-508, gnl|loxAfr1|scaffold_46529 (5649-6269)
               

               
               24-508, gnl|mm7|chr5 (92800296-92800924)
               

               
               24-508, gnl|Mm7|chr5 (92800889-92800390)
               

               
               24-508, gnl|monDom2|scaffold_132 (1509785-1509191)
               

               
               24-508, gnl|oryCun1|scaffold_196367 (56238-55700)
               

               
               24-508, gnl|panTro1|chr3 (55854958-55854340)
               

               
               24-508, gnl|rheMac2|chr5 (53000836-53000218)
               

               
               24-508, gnl|rn3|chr14 (16816052-16815430)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-508, gnl|bosTau2|chr6 (47790006-47789528)
               

               
               24-508, gnl|canFam2|chr32 (4186961-4187567)
               

               
               24-508, gnl|dasNov1|scaffold_8861 (5959-5365)
               

               
               24-508, gnl|echTel1|scaffold_322461 (7334-7974)
               

               
               24-508, gnl|hg17|chr4 (77868682-77869302)
               

               
               24-508, gnl|Hg17|chr4 (77869264-77868778)
               

               
               24-508, gnl|loxAfr1|scaffold_46529 (5649-6269)
               

               
               24-508, gnl|mm7|chr5 (92800296-92800924)
               

               
               24-508, gnl|Mm7|chr5 (92800889-92800390)
               

               
               24-508, gnl|monDom2|scaffold_132 (1509785-1509191)
               

               
               24-508, gnl|oryCun1|scaffold_196367 (56238-55700)
               

               
               24-508, gnl|panTro1|chr3 (55854958-55854340)
               

               
               24-508, gnl|rheMac2|chr5 (53000836-53000218)
               

               
               24-508, gnl|rn3|chr14 (16816052-16815430)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	24-508, gnl\|bosTau2\|chr6 (47790006-47789528)
	24-508, gnl\|canFam2\|chr32 (4186961-4187567)
	24-508, gnl\|dasNov1\|scaffold_8861 (5959-5365)
	24-508, gnl\|echTel1\|scaffold_322461 (7334-7974)
	24-508, gnl\|hg17\|chr4 (77868682-77869302)
	24-508, gnl\|Hg17\|chr4 (77869264-77868778)
	24-508, gnl\|loxAfr1\|scaffold_46529 (5649-6269)
	24-508, gnl\|mm7\|chr5 (92800296-92800924)
	24-508, gnl\|Mm7\|chr5 (92800889-92800390)
	24-508, gnl\|monDom2\|scaffold_132 (1509785-1509191)
	24-508, gnl\|oryCun1\|scaffold_196367 (56238-55700)
	24-508, gnl\|panTro1\|chr3 (55854958-55854340)
	24-508, gnl\|rheMac2\|chr5 (53000836-53000218)
	24-508, gnl\|rn3\|chr14 (16816052-16815430)