Non-Coding RNA Search

pigca_1654.z1

Sequence:


               
               TTGTTTAATATCAAGAAGAGTTGATTTTCAAGCCCAGAGGGACTGAGCATGAGAGACTCA
GCTTAATCAGAGGGCTCGGGCTTACATCATGCCCTGCAAATAATAATAATAATAATCATA
ACATAATAGTACTAATGCCTGTGTTACACTCGGAGCTTGAAATGATCAGTGACATTTCCC
CTGAAGAGGTTAAACAGCCGGGCTCTCTGGGCTTCGCATTTGCATAATAAAGTTCAGAAG
TCACTGCCTTCTACATCTCTCTTAGCAGAAGCCTCCTGTTCTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTTTAATATCAAGAAGAGTTGATTTTCAAGCCCAGAGGGACTGAGCATGAGAGACTCA
GCTTAATCAGAGGGCTCGGGCTTACATCATGCCCTGCAAATAATAATAATAATAATCATA
ACATAATAGTACTAATGCCTGTGTTACACTCGGAGCTTGAAATGATCAGTGACATTTCCC
CTGAAGAGGTTAAACAGCCGGGCTCTCTGGGCTTCGCATTTGCATAATAAAGTTCAGAAG
TCACTGCCTTCTACATCTCTCTTAGCAGAAGCCTCCTGTTCTAG

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-282, gnl|bosTau2|chr17 (6339196-6338910)
               

               
               1-282, gnl|canFam2|chr15 (47717896-47718333)
               

               
               1-282, gnl|dasNov1|scaffold_4036 (60478-60062)
               

               
               1-282, gnl|echTel1|scaffold_285121 (32363-31962)
               

               
               1-282, gnl|galGal2|chr4 (31863870-31864245)
               

               
               1-282, gnl|hg17|chr4 (147515939-147516344)
               

               
               1-282, gnl|Hg17|chr4 (147516357-147516075)
               

               
               1-282, gnl|loxAfr1|scaffold_13057 (19458-19055)
               

               
               1-282, gnl|mm7|chr8 (77288722-77288326)
               

               
               1-282, gnl|Mm7|chr8 (77288307-77288585)
               

               
               1-282, gnl|oryCun1|scaffold_213252 (199275-199699)
               

               
               1-282, gnl|panTro1|chr3 (164768031-164768436)
               

               
               1-282, gnl|rheMac2|chr5 (138391941-138392346)
               

               
               1-282, gnl|rn3|chr19 (31098171-31097760)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-282, gnl|bosTau2|chr17 (6339196-6338910)
               

               
               1-282, gnl|canFam2|chr15 (47717896-47718333)
               

               
               1-282, gnl|dasNov1|scaffold_4036 (60478-60062)
               

               
               1-282, gnl|echTel1|scaffold_285121 (32363-31962)
               

               
               1-282, gnl|galGal2|chr4 (31863870-31864245)
               

               
               1-282, gnl|hg17|chr4 (147515939-147516344)
               

               
               1-282, gnl|Hg17|chr4 (147516357-147516075)
               

               
               1-282, gnl|loxAfr1|scaffold_13057 (19458-19055)
               

               
               1-282, gnl|mm7|chr8 (77288722-77288326)
               

               
               1-282, gnl|Mm7|chr8 (77288307-77288585)
               

               
               1-282, gnl|oryCun1|scaffold_213252 (199275-199699)
               

               
               1-282, gnl|panTro1|chr3 (164768031-164768436)
               

               
               1-282, gnl|rheMac2|chr5 (138391941-138392346)
               

               
               1-282, gnl|rn3|chr19 (31098171-31097760)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               clu (0.119646)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	1-282, gnl\|bosTau2\|chr17 (6339196-6338910)
	1-282, gnl\|canFam2\|chr15 (47717896-47718333)
	1-282, gnl\|dasNov1\|scaffold_4036 (60478-60062)
	1-282, gnl\|echTel1\|scaffold_285121 (32363-31962)
	1-282, gnl\|galGal2\|chr4 (31863870-31864245)
	1-282, gnl\|hg17\|chr4 (147515939-147516344)
	1-282, gnl\|Hg17\|chr4 (147516357-147516075)
	1-282, gnl\|loxAfr1\|scaffold_13057 (19458-19055)
	1-282, gnl\|mm7\|chr8 (77288722-77288326)
	1-282, gnl\|Mm7\|chr8 (77288307-77288585)
	1-282, gnl\|oryCun1\|scaffold_213252 (199275-199699)
	1-282, gnl\|panTro1\|chr3 (164768031-164768436)
	1-282, gnl\|rheMac2\|chr5 (138391941-138392346)
	1-282, gnl\|rn3\|chr19 (31098171-31097760)