Non-Coding RNA Search

plac_0102.z1

Sequence:


               
               CATCCAGCTCCTCCTTGTGGAAGTCAGCCATCTTCTTCTCAAAGTCATCTCGGAGCTTAT
ACCTTTTGGGAGACTGGCTACCCCGAAAAGGCTTCTCAGTATCAGTTTTGGGAGCAAATG
GATCAGATTTCACTTTCGTATCACCCAAGCCTGCATCAGAGAAGCTCCCTTTCTCTTTCA
TTTTCTCTTTATCAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCCAGCTCCTCCTTGTGGAAGTCAGCCATCTTCTTCTCAAAGTCATCTCGGAGCTTAT
ACCTTTTGGGAGACTGGCTACCCCGAAAAGGCTTCTCAGTATCAGTTTTGGGAGCAAATG
GATCAGATTTCACTTTCGTATCACCCAAGCCTGCATCAGAGAAGCTCCCTTTCTCTTTCA
TTTTCTCTTTATCAGTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-197, - strand, RNAz p=0.652625

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-197, - strand, RNAz p=0.652625

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-197, gnl|bosTau2|chr3 (76631907-76632103)
               

               
               1-197, gnl|canFam2|chr15 (8977037-8976889)
               

               
               1-197, gnl|danRer3|chr16 (36562638-36562844)
               

               
               1-197, gnl|dasNov1|scaffold_37076 (7044-7192)
               

               
               1-197, gnl|echTel1|scaffold_277065 (2275-2127)
               

               
               1-197, gnl|fr1|chrUn (99386264-99386106)
               

               
               1-197, gnl|galGal2|chr23 (3594222-3594074)
               

               
               1-197, gnl|hg17|chr1 (36423793-36423941)
               

               
               1-197, gnl|Hg17|chr1 (36424007-36423811)
               

               
               1-197, gnl|loxAfr1|scaffold_10221 (14906-15054)
               

               
               1-197, gnl|mm7|chr4 (125623167-125623028)
               

               
               1-197, gnl|Mm7|chr4 (125622960-125623147)
               

               
               1-197, gnl|monDom2|scaffold_43 (13886370-13886222)
               

               
               1-197, gnl|oryCun1|scaffold_195477 (46383-46531)
               

               
               1-197, gnl|panTro1|chr1 (37255081-37255229)
               

               
               1-197, gnl|rheMac2|chr1 (39156603-39156751)
               

               
               1-197, gnl|rn3|chr5 (145544867-145544728)
               

               
               1-197, gnl|xenTro1|scaffold_442 (1030179-1030031)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-197, gnl|bosTau2|chr3 (76631907-76632103)
               

               
               1-197, gnl|canFam2|chr15 (8977037-8976889)
               

               
               1-197, gnl|danRer3|chr16 (36562638-36562844)
               

               
               1-197, gnl|dasNov1|scaffold_37076 (7044-7192)
               

               
               1-197, gnl|echTel1|scaffold_277065 (2275-2127)
               

               
               1-197, gnl|fr1|chrUn (99386264-99386106)
               

               
               1-197, gnl|galGal2|chr23 (3594222-3594074)
               

               
               1-197, gnl|hg17|chr1 (36423793-36423941)
               

               
               1-197, gnl|Hg17|chr1 (36424007-36423811)
               

               
               1-197, gnl|loxAfr1|scaffold_10221 (14906-15054)
               

               
               1-197, gnl|mm7|chr4 (125623167-125623028)
               

               
               1-197, gnl|Mm7|chr4 (125622960-125623147)
               

               
               1-197, gnl|monDom2|scaffold_43 (13886370-13886222)
               

               
               1-197, gnl|oryCun1|scaffold_195477 (46383-46531)
               

               
               1-197, gnl|panTro1|chr1 (37255081-37255229)
               

               
               1-197, gnl|rheMac2|chr1 (39156603-39156751)
               

               
               1-197, gnl|rn3|chr5 (145544867-145544728)
               

               
               1-197, gnl|xenTro1|scaffold_442 (1030179-1030031)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-197, gnl\|bosTau2\|chr3 (76631907-76632103)
	1-197, gnl\|canFam2\|chr15 (8977037-8976889)
	1-197, gnl\|danRer3\|chr16 (36562638-36562844)
	1-197, gnl\|dasNov1\|scaffold_37076 (7044-7192)
	1-197, gnl\|echTel1\|scaffold_277065 (2275-2127)
	1-197, gnl\|fr1\|chrUn (99386264-99386106)
	1-197, gnl\|galGal2\|chr23 (3594222-3594074)
	1-197, gnl\|hg17\|chr1 (36423793-36423941)
	1-197, gnl\|Hg17\|chr1 (36424007-36423811)
	1-197, gnl\|loxAfr1\|scaffold_10221 (14906-15054)
	1-197, gnl\|mm7\|chr4 (125623167-125623028)
	1-197, gnl\|Mm7\|chr4 (125622960-125623147)
	1-197, gnl\|monDom2\|scaffold_43 (13886370-13886222)
	1-197, gnl\|oryCun1\|scaffold_195477 (46383-46531)
	1-197, gnl\|panTro1\|chr1 (37255081-37255229)
	1-197, gnl\|rheMac2\|chr1 (39156603-39156751)
	1-197, gnl\|rn3\|chr5 (145544867-145544728)
	1-197, gnl\|xenTro1\|scaffold_442 (1030179-1030031)