Non-Coding RNA Search

ramn3525b_g16.y1

Sequence:


               
               CGACTGTATCTTCTAGGCTGCTTGAGTGGCATTTACACATTCCTTCTTTGAGGACTCATA
AAGTGCTCGCTATGTGCACTGGTGGATTCCTTTACTCTCCAAAGGGCAAGAATTCATGCA
TAGATGACTCACTGCCTATTCTAGAGGGCACAGGATTGGGGTTTCCATGTACAAGTCAGA
GAAGAGAGAGCTGCTTGGATTTTTGACTAAGTTTGGGTCTTTGCCAGGGCTTTTCTCTTT
ATCCCAAGGAAGGAATCAATGAACATAATTCCACCAAGTATATAGAAAGATGCCATTTGA
ATAGATGTAACACCCATGAGACTCCTATCATCAAAGAGTAGTTCAAGGAAAACGAATGAT
GCATATTACCGACATAAATTATTGATGTACGGAACCATAAGTTCACATACGTATGCTAAG
CGTTAGTCACATACAAAGTGACTAAAGATGTGGGGGGGCCTAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACTGTATCTTCTAGGCTGCTTGAGTGGCATTTACACATTCCTTCTTTGAGGACTCATA
AAGTGCTCGCTATGTGCACTGGTGGATTCCTTTACTCTCCAAAGGGCAAGAATTCATGCA
TAGATGACTCACTGCCTATTCTAGAGGGCACAGGATTGGGGTTTCCATGTACAAGTCAGA
GAAGAGAGAGCTGCTTGGATTTTTGACTAAGTTTGGGTCTTTGCCAGGGCTTTTCTCTTT
ATCCCAAGGAAGGAATCAATGAACATAATTCCACCAAGTATATAGAAAGATGCCATTTGA
ATAGATGTAACACCCATGAGACTCCTATCATCAAAGAGTAGTTCAAGGAAAACGAATGAT
GCATATTACCGACATAAATTATTGATGTACGGAACCATAAGTTCACATACGTATGCTAAG
CGTTAGTCACATACAAAGTGACTAAAGATGTGGGGGGGCCTAATA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               2-417, gnl|bosTau2|chr3 (33527705-33528108)
               

               
               2-417, gnl|canFam2|chr6 (47222813-47222387)
               

               
               2-417, gnl|echTel1|scaffold_238175 (4346-4774)
               

               
               2-417, gnl|galGal2|chr8 (892978-893396)
               

               
               2-417, gnl|hg17|chr1 (107664463-107664891)
               

               
               2-417, gnl|Hg17|chr1 (107664514-107664929)
               

               
               2-417, gnl|mm7|chr3 (109668011-109667572)
               

               
               2-417, gnl|Mm7|chr3 (109667956-109667532)
               

               
               2-417, gnl|monDom2|scaffold_0 (9465453-9464976)
               

               
               2-417, gnl|oryCun1|scaffold_200911 (120797-121231)
               

               
               2-417, gnl|panTro1|chr1 (106770593-106771021)
               

               
               2-417, gnl|rheMac2|chr1 (110320045-110320475)
               

               
               2-417, gnl|rn3|chr2 (205473946-205473502)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-417, gnl|bosTau2|chr3 (33527705-33528108)
               

               
               2-417, gnl|canFam2|chr6 (47222813-47222387)
               

               
               2-417, gnl|echTel1|scaffold_238175 (4346-4774)
               

               
               2-417, gnl|galGal2|chr8 (892978-893396)
               

               
               2-417, gnl|hg17|chr1 (107664463-107664891)
               

               
               2-417, gnl|Hg17|chr1 (107664514-107664929)
               

               
               2-417, gnl|mm7|chr3 (109668011-109667572)
               

               
               2-417, gnl|Mm7|chr3 (109667956-109667532)
               

               
               2-417, gnl|monDom2|scaffold_0 (9465453-9464976)
               

               
               2-417, gnl|oryCun1|scaffold_200911 (120797-121231)
               

               
               2-417, gnl|panTro1|chr1 (106770593-106771021)
               

               
               2-417, gnl|rheMac2|chr1 (110320045-110320475)
               

               
               2-417, gnl|rn3|chr2 (205473946-205473502)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               amn (0.417711)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)

	2-417, gnl\|bosTau2\|chr3 (33527705-33528108)
	2-417, gnl\|canFam2\|chr6 (47222813-47222387)
	2-417, gnl\|echTel1\|scaffold_238175 (4346-4774)
	2-417, gnl\|galGal2\|chr8 (892978-893396)
	2-417, gnl\|hg17\|chr1 (107664463-107664891)
	2-417, gnl\|Hg17\|chr1 (107664514-107664929)
	2-417, gnl\|mm7\|chr3 (109668011-109667572)
	2-417, gnl\|Mm7\|chr3 (109667956-109667532)
	2-417, gnl\|monDom2\|scaffold_0 (9465453-9464976)
	2-417, gnl\|oryCun1\|scaffold_200911 (120797-121231)
	2-417, gnl\|panTro1\|chr1 (106770593-106771021)
	2-417, gnl\|rheMac2\|chr1 (110320045-110320475)
	2-417, gnl\|rn3\|chr2 (205473946-205473502)