Non-Coding RNA Search

ramn3540b_m5.y1

Sequence:


               
               ATGTGGCGTTGTGTGTACCCTCATACGTACAGGTGTGCATGCGTGCGTGGGTCTGGGCTG
TTCTGATCCGGAGGTCGTTTTGGCTGCGGTGTGCACACGCCCACCCGCTCTCTCCTTTCC
TCTGTCCATCTCTCTGGCTTGGGAGGAGCACTCGCTGGCCTTTCCTCTGACTCGTTGCCA
GGATCTGCCTCTGGCCGTTCCCAGAAGGGGGACGACCCCACTGGCATCGTGTTGGGCATT
TCTTTTCCAGGTTGGCCTGTGATGGAAAGGAAGGCTTCTGATTCCTAGAAAACACAGCAA
CAGAAGACCTAGACTCTCCCCGCCCCTTCATCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTGGCGTTGTGTGTACCCTCATACGTACAGGTGTGCATGCGTGCGTGGGTCTGGGCTG
TTCTGATCCGGAGGTCGTTTTGGCTGCGGTGTGCACACGCCCACCCGCTCTCTCCTTTCC
TCTGTCCATCTCTCTGGCTTGGGAGGAGCACTCGCTGGCCTTTCCTCTGACTCGTTGCCA
GGATCTGCCTCTGGCCGTTCCCAGAAGGGGGACGACCCCACTGGCATCGTGTTGGGCATT
TCTTTTCCAGGTTGGCCTGTGATGGAAAGGAAGGCTTCTGATTCCTAGAAAACACAGCAA
CAGAAGACCTAGACTCTCCCCGCCCCTTCATCCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               61-295, - strand, RNAz p=0.957896
               

               
               142-300, - strand, RNAz p=0.92688

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               61-295, - strand, RNAz p=0.957896
               

               
               142-300, - strand, RNAz p=0.92688

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               40-328, gnl|bosTau2|chr23 (12950645-12950943)
               

               
               40-328, gnl|canFam2|chr12 (14440247-14440641)
               

               
               40-328, gnl|dasNov1|scaffold_3896 (49720-49279)
               

               
               40-328, gnl|hg17|chr6 (42942518-42942915)
               

               
               40-328, gnl|Hg17|chr6 (42942647-42942948)
               

               
               40-328, gnl|loxAfr1|scaffold_22347 (22519-22909)
               

               
               40-328, gnl|mm7|chr17 (44929713-44929427)
               

               
               40-328, gnl|monDom2|scaffold_0 (198812382-198811983)
               

               
               40-328, gnl|oryCun1|scaffold_83168 (5753-6107)
               

               
               40-328, gnl|panTro1|chr5 (43529789-43530186)
               

               
               40-328, gnl|rheMac2|chr4 (42750489-42750886)
               

               
               40-328, gnl|rn3|chr9 (9377161-9377451)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-328, gnl|bosTau2|chr23 (12950645-12950943)
               

               
               40-328, gnl|canFam2|chr12 (14440247-14440641)
               

               
               40-328, gnl|dasNov1|scaffold_3896 (49720-49279)
               

               
               40-328, gnl|hg17|chr6 (42942518-42942915)
               

               
               40-328, gnl|Hg17|chr6 (42942647-42942948)
               

               
               40-328, gnl|loxAfr1|scaffold_22347 (22519-22909)
               

               
               40-328, gnl|mm7|chr17 (44929713-44929427)
               

               
               40-328, gnl|monDom2|scaffold_0 (198812382-198811983)
               

               
               40-328, gnl|oryCun1|scaffold_83168 (5753-6107)
               

               
               40-328, gnl|panTro1|chr5 (43529789-43530186)
               

               
               40-328, gnl|rheMac2|chr4 (42750489-42750886)
               

               
               40-328, gnl|rn3|chr9 (9377161-9377451)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               amn (0.417711)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)

	61-295, - strand, RNAz p=0.957896
	142-300, - strand, RNAz p=0.92688

	40-328, gnl\|bosTau2\|chr23 (12950645-12950943)
	40-328, gnl\|canFam2\|chr12 (14440247-14440641)
	40-328, gnl\|dasNov1\|scaffold_3896 (49720-49279)
	40-328, gnl\|hg17\|chr6 (42942518-42942915)
	40-328, gnl\|Hg17\|chr6 (42942647-42942948)
	40-328, gnl\|loxAfr1\|scaffold_22347 (22519-22909)
	40-328, gnl\|mm7\|chr17 (44929713-44929427)
	40-328, gnl\|monDom2\|scaffold_0 (198812382-198811983)
	40-328, gnl\|oryCun1\|scaffold_83168 (5753-6107)
	40-328, gnl\|panTro1\|chr5 (43529789-43530186)
	40-328, gnl\|rheMac2\|chr4 (42750489-42750886)
	40-328, gnl\|rn3\|chr9 (9377161-9377451)